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Aliases for SNX13 Gene

Aliases for SNX13 Gene

  • Sorting Nexin 13 2 3
  • KIAA0713 4 6
  • RGS-PX1 3 4
  • Rgs Domain- And Phox Domain-Containing Protein 3
  • RGS Domain- And PHOX Domain-Containing Protein 4
  • Sorting Nexin-13 3

External Ids for SNX13 Gene

Previous GeneCards Identifiers for SNX13 Gene

  • GC07M017477
  • GC07M017576
  • GC07M017605

Summaries for SNX13 Gene

Entrez Gene Summary for SNX13 Gene

  • This gene encodes a PHOX domain- and RGS domain-containing protein that belongs to the sorting nexin (SNX) family and the regulator of G protein signaling (RGS) family. The PHOX domain is a phosphoinositide binding domain, and the SNX family members are involved in intracellular trafficking. The RGS family members are regulatory molecules that act as GTPase activating proteins for G alpha subunits of heterotrimeric G proteins. The RGS domain of this protein interacts with G alpha(s), accelerates its GTP hydrolysis, and attenuates G alpha(s)-mediated signaling. Overexpression of this protein delayes lysosomal degradation of the epidermal growth factor receptor. Because of its bifunctional role, this protein may link heterotrimeric G protein signaling and vesicular trafficking. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNX13 Gene

SNX13 (Sorting Nexin 13) is a Protein Coding gene. Diseases associated with SNX13 include acrocephalosyndactylia. GO annotations related to this gene include phosphatidylinositol binding. An important paralog of this gene is SNX14.

UniProtKB/Swiss-Prot for SNX13 Gene

  • May be involved in several stages of intracellular trafficking. May play a role in endosome homeostasis (By similarity). Acts as a GAP for Galphas.

Gene Wiki entry for SNX13 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNX13 Gene

Genomics for SNX13 Gene

Regulatory Elements for SNX13 Gene

Genomic Location for SNX13 Gene

Start:
17,790,761 bp from pter
End:
17,940,518 bp from pter
Size:
149,758 bases
Orientation:
Minus strand

Genomic View for SNX13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNX13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNX13 Gene

Proteins for SNX13 Gene

  • Protein details for SNX13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y5W8-SNX13_HUMAN
    Recommended name:
    Sorting nexin-13
    Protein Accession:
    Q9Y5W8
    Secondary Accessions:
    • B2RCI9
    • O94821
    • Q8WVZ2
    • Q8WXH8

    Protein attributes for SNX13 Gene

    Size:
    968 amino acids
    Molecular mass:
    112189 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH22060.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA34433.1; Type=Frameshift; Positions=887; Evidence={ECO:0000305};

    Alternative splice isoforms for SNX13 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SNX13 Gene

Proteomics data for SNX13 Gene at MOPED

Post-translational modifications for SNX13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SNX13 Gene

No data available for DME Specific Peptides for SNX13 Gene

Domains for SNX13 Gene

Gene Families for SNX13 Gene

HGNC:
  • SNX :Sorting nexins

Suggested Antigen Peptide Sequences for SNX13 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y5W8

UniProtKB/Swiss-Prot:

SNX13_HUMAN :
  • Q9Y5W8
Domain:
  • The PX domain mediates interaction with membranes enriched in phosphatidylinositol 3-phosphate.
  • Contains 1 PX (phox homology) domain.
  • Contains 1 PXA domain.
  • Contains 1 RGS domain.
Family:
  • Belongs to the sorting nexin family.
genes like me logo Genes that share domains with SNX13: view

Function for SNX13 Gene

Molecular function for SNX13 Gene

UniProtKB/Swiss-Prot Function: May be involved in several stages of intracellular trafficking. May play a role in endosome homeostasis (By similarity). Acts as a GAP for Galphas.

Gene Ontology (GO) - Molecular Function for SNX13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004129 cytochrome-c oxidase activity --
GO:0032266 phosphatidylinositol-3-phosphate binding IDA 25148684
GO:0035091 phosphatidylinositol binding IDA 11729322
genes like me logo Genes that share ontologies with SNX13: view
genes like me logo Genes that share phenotypes with SNX13: view

Animal Models for SNX13 Gene

MGI Knock Outs for SNX13:

miRNA for SNX13 Gene

miRTarBase miRNAs that target SNX13

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for SNX13 Gene

Localization for SNX13 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SNX13 Gene

Early endosome membrane; Peripheral membrane protein; Cytoplasmic side.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SNX13 Gene COMPARTMENTS Subcellular localization image for SNX13 gene
Compartment Confidence
endosome 5
endoplasmic reticulum 3
plasma membrane 1
vacuole 1

Gene Ontology (GO) - Cellular Components for SNX13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005743 mitochondrial inner membrane --
GO:0005769 early endosome IDA 11729322
GO:0016020 membrane --
GO:0031901 early endosome membrane IEA --
genes like me logo Genes that share ontologies with SNX13: view

Pathways for SNX13 Gene

SuperPathways for SNX13 Gene

No Data Available

Interacting Proteins for SNX13 Gene

Gene Ontology (GO) - Biological Process for SNX13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport IMP 11729322
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway --
GO:0038032 termination of G-protein coupled receptor signaling pathway IEA --
GO:0043547 positive regulation of GTPase activity IDA 11729322
genes like me logo Genes that share ontologies with SNX13: view

No data available for Pathways by source for SNX13 Gene

Compounds for SNX13 Gene

(1) Novoseek inferred chemical compound relationships for SNX13 Gene

Compound -log(P) Hits PubMed IDs
tyrosine 25.1 3
genes like me logo Genes that share compounds with SNX13: view

Transcripts for SNX13 Gene

Unigene Clusters for SNX13 Gene

Sorting nexin 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNX13 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^
SP1: - - - -
SP2: - - - -
SP3: - -
SP4: - -
SP5:
SP6: - - -

ExUns: 21a · 21b ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28a · 28b ^ 29
SP1: - -
SP2:
SP3:
SP4:
SP5:
SP6:

Relevant External Links for SNX13 Gene

GeneLoc Exon Structure for
SNX13
ECgene alternative splicing isoforms for
SNX13

Expression for SNX13 Gene

mRNA expression in normal human tissues for SNX13 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SNX13 Gene

SOURCE GeneReport for Unigene cluster for SNX13 Gene Hs.487648

genes like me logo Genes that share expressions with SNX13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SNX13 Gene

Orthologs for SNX13 Gene

This gene was present in the common ancestor of animals.

Orthologs for SNX13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNX13 35
  • 99.69 (n)
  • 99.69 (a)
SNX13 36
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNX13 35
  • 93.99 (n)
  • 96.21 (a)
SNX13 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNX13 35
  • 95.13 (n)
  • 97.69 (a)
SNX13 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snx13 35
  • 93.07 (n)
  • 97.18 (a)
Snx13 16
Snx13 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNX13 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNX13 36
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Snx13 35
  • 90.77 (n)
  • 94.51 (a)
chicken
(Gallus gallus)
Aves SNX13 35
  • 84.81 (n)
  • 91.95 (a)
SNX13 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNX13 36
  • 87 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia snx13 35
  • 79.77 (n)
  • 85.64 (a)
Str.19364 35
zebrafish
(Danio rerio)
Actinopterygii snx13 35
  • 70.17 (n)
  • 79.83 (a)
snx13 36
  • 79 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea CELE_Y116A8C.26 35
  • 47.29 (n)
  • 35.8 (a)
snx-13 36
  • 34 (a)
OneToOne
Y116A8C.26 37
  • 33 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 30 (a)
OneToMany
CSA.737 36
  • 42 (a)
OneToMany
Species with no ortholog for SNX13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SNX13 Gene

ENSEMBL:
Gene Tree for SNX13 (if available)
TreeFam:
Gene Tree for SNX13 (if available)

Paralogs for SNX13 Gene

Paralogs for SNX13 Gene

Selected SIMAP similar genes for SNX13 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with SNX13: view

Variants for SNX13 Gene

Sequence variations from dbSNP and Humsavar for SNX13 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs14780 -- 17,790,864(+) TTGTT(C/G)TTTCT utr-variant-3-prime
rs949451 -- 17,818,931(-) AGGTA(C/T)AGATA intron-variant
rs1051603 -- 17,822,402(-) ACTCA(C/G)TATTA intron-variant
rs1055751 -- 17,791,755(-) TTTAA(A/C)CATAA utr-variant-3-prime
rs1357796 -- 17,833,852(+) AGTTA(C/T)ATTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SNX13 Gene

Variant ID Type Subtype PubMed ID
nsv887804 CNV Gain 21882294
esv2734066 CNV Deletion 23290073
esv2734067 CNV Deletion 23290073
esv23642 CNV Loss 19812545
nsv830913 CNV Gain+Loss 17160897
esv996210 CNV Gain 20482838
nsv887808 CNV Gain 21882294
esv2463128 CNV Deletion 19546169
esv2734068 CNV Deletion 23290073
esv2734069 CNV Deletion 23290073
esv1984816 CNV Deletion 18987734
esv2734070 CNV Deletion 23290073
esv993770 CNV Deletion 20482838
nsv365749 CNV Loss 16902084

Relevant External Links for SNX13 Gene

HapMap Linkage Disequilibrium report
SNX13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNX13 Gene

Disorders for SNX13 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for SNX13 Gene including...

Search for SNX13 Gene in MalaCards »

(1) University of Copenhagen DISEASES for SNX13 Gene

Relevant External Links for SNX13

Genetic Association Database (GAD)
SNX13
Human Genome Epidemiology (HuGE) Navigator
SNX13
genes like me logo Genes that share disorders with SNX13: view

No data available for UniProtKB/Swiss-Prot for SNX13 Gene

Publications for SNX13 Gene

  1. RGS-PX1, a GAP for GalphaS and sorting nexin in vesicular trafficking. (PMID: 11729322) Zheng B. … Farquhar M.G. (Science 2001) 2 3 4 23
  2. A large family of endosome-localized proteins related to sorting nexin 1. (PMID: 11485546) Teasdale R.D. … Gleeson P.A. (Biochem. J. 2001) 2 3 4
  3. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 3 4
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  5. Identification and characterisation of the gene TWIST NEIGHBOR (TWISTNB) located in the microdeletion syndrome 7p21 region. (PMID: 12438708) Kosan C. … Kunz J. (Cytogenet. Genome Res. 2002) 3 23

Products for SNX13 Gene

Sources for SNX13 Gene

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