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Aliases for SNRPGP15 Gene

Subcategory (RNA class) for SNRPGP15 Gene

antisense

Aliases for SNRPGP15 Gene

  • Small Nuclear Ribonucleoprotein Polypeptide G Pseudogene 15 2 3 5

External Ids for SNRPGP15 Gene

ORGUL Members for SNRPGP15 Gene

Previous GeneCards Identifiers for SNRPGP15 Gene

  • GC19P014601

Summaries for SNRPGP15 Gene

GeneCards Summary for SNRPGP15 Gene

SNRPGP15 (Small Nuclear Ribonucleoprotein Polypeptide G Pseudogene 15) is a Pseudogene, and is affiliated with the antisense RNA class. GO annotations related to this gene include RNA binding.

UniProtKB/Swiss-Prot for SNRPGP15 Gene

  • Associated with snRNP U1, U2, U4/U6 and U5.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRPGP15 Gene

Genomics for SNRPGP15 Gene

Regulatory Elements for SNRPGP15 Gene

Enhancers for SNRPGP15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G013632 1.5 Ensembl ENCODE dbSUPER 19.2 -856.1 -856054 1.7 PKNOX1 ZFP64 ZNF133 FEZF1 ZNF48 GLIS2 KLF7 YY2 NFYC REST CCDC130 SNRPGP15 MRI1 RPS6P25 WDR83OS RTBDN SYCE2 MAST1 TRMT1 C19orf43
GH19G014111 1.8 FANTOM5 ENCODE dbSUPER 11.1 -373.2 -373166 9.3 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF766 CCDC130 MRI1 ZNF333 TRMT1 PRKACA LOC284454 RFX1 SNRPGP15 TECR ADGRE5
GH19G014555 1.5 Ensembl ENCODE dbSUPER 11.3 +67.2 67167 1.9 HDGF PKNOX1 ATF1 ZFP64 ARID4B SIN3A ZNF2 ZNF48 ZNF121 CBX5 CCDC130 AKAP8 MRI1 ZNF333 SNRPGP15 RFX1 NDUFB7 DNAJB1
GH19G014494 1.4 ENCODE dbSUPER 11.5 +7.0 7013 3.8 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF766 ZNF333 SNRPGP15 DNAJB1 GIPC1 GC19P014515
GH19G014072 1.4 ENCODE dbSUPER 11.1 -415.7 -415663 4.2 HDGF ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 PALM3 PRKACA SNRPGP15 MIR1199 GC19M014079
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNRPGP15 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNRPGP15 Gene

Chromosome:
19
Start:
14,489,300 bp from pter
End:
14,489,874 bp from pter
Size:
575 bases
Orientation:
Plus strand

Genomic View for SNRPGP15 Gene

Genes around SNRPGP15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPGP15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPGP15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPGP15 Gene

Proteins for SNRPGP15 Gene

  • Protein details for SNRPGP15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MWD9-RUXGL_HUMAN
    Recommended name:
    Putative small nuclear ribonucleoprotein G-like protein 15
    Protein Accession:
    A8MWD9

    Protein attributes for SNRPGP15 Gene

    Size:
    76 amino acids
    Molecular mass:
    8544 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNRPGP15 Gene

Post-translational modifications for SNRPGP15 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SNRPGP15 Gene

Domains & Families for SNRPGP15 Gene

Protein Domains for SNRPGP15 Gene

Graphical View of Domain Structure for InterPro Entry

A8MWD9

UniProtKB/Swiss-Prot:

RUXGL_HUMAN :
  • Belongs to the snRNP Sm proteins family.
Family:
  • Belongs to the snRNP Sm proteins family.
genes like me logo Genes that share domains with SNRPGP15: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SNRPGP15 Gene

Function for SNRPGP15 Gene

Molecular function for SNRPGP15 Gene

UniProtKB/Swiss-Prot Function:
Associated with snRNP U1, U2, U4/U6 and U5.

Gene Ontology (GO) - Molecular Function for SNRPGP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 contributes_to RNA binding IBA --
genes like me logo Genes that share ontologies with SNRPGP15: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRPGP15 Gene

Localization for SNRPGP15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SNRPGP15 Gene

Gene Ontology (GO) - Cellular Components for SNRPGP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005682 U5 snRNP IBA --
GO:0005685 U1 snRNP IBA --
GO:0005686 U2 snRNP IBA --
GO:0005687 U4 snRNP IBA --
GO:0005689 U12-type spliceosomal complex IBA --
genes like me logo Genes that share ontologies with SNRPGP15: view

No data available for Subcellular locations from COMPARTMENTS for SNRPGP15 Gene

Pathways & Interactions for SNRPGP15 Gene

SuperPathways for SNRPGP15 Gene

No Data Available

Interacting Proteins for SNRPGP15 Gene

Selected Interacting proteins: A8MWD9-RUXGL_HUMAN for SNRPGP15 Gene via IID

Gene Ontology (GO) - Biological Process for SNRPGP15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000387 spliceosomal snRNP assembly IEA --
GO:0000398 mRNA splicing, via spliceosome IBA --
genes like me logo Genes that share ontologies with SNRPGP15: view

No data available for Pathways by source and SIGNOR curated interactions for SNRPGP15 Gene

Drugs & Compounds for SNRPGP15 Gene

No Compound Related Data Available

Transcripts for SNRPGP15 Gene

mRNA/cDNA for SNRPGP15 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPGP15 Gene

No ASD Table

Relevant External Links for SNRPGP15 Gene

GeneLoc Exon Structure for
SNRPGP15
ECgene alternative splicing isoforms for
SNRPGP15

Expression for SNRPGP15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNRPGP15 Gene

Protein differential expression in normal tissues from HIPED for SNRPGP15 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SNRPGP15 Gene



Protein tissue co-expression partners for SNRPGP15 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SNRPGP15 Gene:

SNRPGP15
genes like me logo Genes that share expression patterns with SNRPGP15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNRPGP15 Gene

Orthologs for SNRPGP15 Gene

Evolution for SNRPGP15 Gene

ENSEMBL:
Gene Tree for SNRPGP15 (if available)
TreeFam:
Gene Tree for SNRPGP15 (if available)

No data available for Orthologs for SNRPGP15 Gene

Paralogs for SNRPGP15 Gene

No data available for Paralogs for SNRPGP15 Gene

Variants for SNRPGP15 Gene

Relevant External Links for SNRPGP15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRPGP15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNRPGP15 Gene

Disorders for SNRPGP15 Gene

No disorders were found for SNRPGP15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNRPGP15 Gene

Publications for SNRPGP15 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Identifying biological pathways that underlie primordial short stature using network analysis. (PMID: 24711643) Hanson D. … Clayton P.E. (J. Mol. Endocrinol. 2014) 3 64
  4. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3 64
  5. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for SNRPGP15 Gene

Sources for SNRPGP15 Gene

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