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Aliases for SNRPEP2 Gene

Aliases for SNRPEP2 Gene

  • Small Nuclear Ribonucleoprotein Polypeptide E Pseudogene 2 2 3 5
  • Small Nuclear Ribonucleoprotein Polypeptide E-Like 1 2 3
  • BA390F4.4 3
  • SNRPEL1 3

External Ids for SNRPEP2 Gene

Previous HGNC Symbols for SNRPEP2 Gene

  • SNRPEL1

Summaries for SNRPEP2 Gene

GeneCards Summary for SNRPEP2 Gene

SNRPEP2 (Small Nuclear Ribonucleoprotein Polypeptide E Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRPEP2 Gene

Genomics for SNRPEP2 Gene

Regulatory Elements for SNRPEP2 Gene

Enhancers for SNRPEP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F006715 0.4 ENCODE 18.8 +32.6 32583 2.5 HDGF ATF1 MLX ARID4B SIN3A DMAP1 YBX1 ZNF48 ETS1 YY1 LOC105375968 ENSG00000225489 SNRPEP2
GH09F006786 0.9 Ensembl ENCODE 16 -39.4 -39392 3.3 ELF3 TBP MLX ARID4B SIN3A YY1 CREM THAP11 MIXL1 HMG20B SNRPEP2 KDM4C PIR49656
GH09F006679 0.9 FANTOM5 Ensembl ENCODE 10 +66.6 66618 5.2 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 LOC105375968 AK4P4 KIAA2026 SNRPEP2 ENSG00000225489 GLDC KDM4C UHRF2 GC09P006678
GH09F006873 0.8 Ensembl ENCODE 9.9 -125.0 -125043 0.7 JUND JUN ZZZ3 SNRPEP2 ENSG00000224972 ACTG1P14
GH09F007052 0.2 ENCODE 9.9 -303.8 -303772 0.1 CTCF ZNF654 MAX REST RAD21 JUND SMARCA4 SMC3 HMBOX1 ZZZ3 SNRPEP2 GC09P007052 GC09P007056
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNRPEP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNRPEP2 Gene

Chromosome:
9
Start:
6,748,553 bp from pter
End:
6,749,014 bp from pter
Size:
462 bases
Orientation:
Minus strand

Genomic View for SNRPEP2 Gene

Genes around SNRPEP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPEP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPEP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPEP2 Gene

Proteins for SNRPEP2 Gene

Post-translational modifications for SNRPEP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNRPEP2 Gene

Domains & Families for SNRPEP2 Gene

Suggested Antigen Peptide Sequences for SNRPEP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SNRPEP2 Gene

Function for SNRPEP2 Gene

Phenotypes for SNRPEP2 Gene

GenomeRNAi human phenotypes for SNRPEP2:
genes like me logo Genes that share phenotypes with SNRPEP2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRPEP2 Gene

Localization for SNRPEP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNRPEP2 Gene

Pathways & Interactions for SNRPEP2 Gene

SuperPathways for SNRPEP2 Gene

No Data Available

Interacting Proteins for SNRPEP2 Gene

Gene Ontology (GO) - Biological Process for SNRPEP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNRPEP2 Gene

Transcripts for SNRPEP2 Gene

mRNA/cDNA for SNRPEP2 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPEP2 Gene

No ASD Table

Relevant External Links for SNRPEP2 Gene

GeneLoc Exon Structure for
SNRPEP2
ECgene alternative splicing isoforms for
SNRPEP2

Expression for SNRPEP2 Gene

mRNA expression in normal human tissues for SNRPEP2 Gene

Protein differential expression in normal tissues from HIPED for SNRPEP2 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SNRPEP2 Gene



Protein tissue co-expression partners for SNRPEP2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SNRPEP2 Gene:

SNRPEP2
genes like me logo Genes that share expression patterns with SNRPEP2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SNRPEP2 Gene

Orthologs for SNRPEP2 Gene

Evolution for SNRPEP2 Gene

ENSEMBL:
Gene Tree for SNRPEP2 (if available)
TreeFam:
Gene Tree for SNRPEP2 (if available)

No data available for Orthologs for SNRPEP2 Gene

Paralogs for SNRPEP2 Gene

No data available for Paralogs for SNRPEP2 Gene

Variants for SNRPEP2 Gene

Relevant External Links for SNRPEP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRPEP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNRPEP2 Gene

Disorders for SNRPEP2 Gene

No disorders were found for SNRPEP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNRPEP2 Gene

Publications for SNRPEP2 Gene

  1. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi D.J. … Shiio Y. (J. Proteome Res. 2014) 3 64
  2. Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. (PMID: 17643375) Jeronimo C. … Coulombe B. (Mol. Cell 2007) 3 64

Products for SNRPEP2 Gene

Sources for SNRPEP2 Gene

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