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Aliases for SNRPD2P2 Gene

Subcategory (RNA class) for SNRPD2P2 Gene

lncRNA

Aliases for SNRPD2P2 Gene

  • Small Nuclear Ribonucleoprotein D2 Pseudogene 2 2 3 5

External Ids for SNRPD2P2 Gene

ORGUL Members for SNRPD2P2 Gene

Previous GeneCards Identifiers for SNRPD2P2 Gene

  • GC01M231614
  • GC01M202094

Summaries for SNRPD2P2 Gene

GeneCards Summary for SNRPD2P2 Gene

SNRPD2P2 (Small Nuclear Ribonucleoprotein D2 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for SNRPD2P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRPD2P2 Gene

Genomics for SNRPD2P2 Gene

Regulatory Elements for SNRPD2P2 Gene

Enhancers for SNRPD2P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H231418 1.4 ENCODE dbSUPER 14.8 +55.3 55321 5 MLX ZFP64 FEZF1 DMAP1 YY1 SP3 NFYC ZNF610 ZNF585B GLIS1 SPRTN SNRPD2P2 RN7SL837P RPS24P4 LINC01737 COG2 C1orf131 EGLN1 PIR59803
GH01H231335 1.4 ENCODE dbSUPER 14.7 +138.2 138221 5 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SPRTN SNRPD2P2 RN7SL837P RPS24P4 LINC01737 C1orf131 LINC00582 EGLN1 DISC1 EXOC8
GH01H231733 0.8 FANTOM5 14.6 -256.9 -256894 0 ZNF792 ZNF133 ZNF175 ZNF140 ZNF514 ZNF157 ZNF169 ZNF239 ZNF548 ZNF680 C1orf131 SNRPD2P2 RN7SL837P LINC01745 GC01P231693 ENSG00000274121
GH01H231493 1 FANTOM5 ENCODE 0.4 -17.0 -17013 0 HDAC1 CTCF ATF1 ETV1 NR2F1 DPF2 RELA ZNF589 PRDM6 SMARCA4 EXOC8 GC01M231493 SNRPD2P2
GH01H231460 0.8 ENCODE 0.4 +15.7 15716 0 HDAC1 ATF1 BACH1 BMI1 BATF ZNF766 ZNF316 POLR2A EED NFE2 SNRPD2P2 EGLN1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNRPD2P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNRPD2P2 Gene

Chromosome:
1
Start:
231,475,762 bp from pter
End:
231,476,525 bp from pter
Size:
764 bases
Orientation:
Minus strand

Genomic View for SNRPD2P2 Gene

Genes around SNRPD2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPD2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPD2P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPD2P2 Gene

Proteins for SNRPD2P2 Gene

Post-translational modifications for SNRPD2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNRPD2P2 Gene

Domains & Families for SNRPD2P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNRPD2P2 Gene

Function for SNRPD2P2 Gene

Phenotypes From GWAS Catalog for SNRPD2P2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNRPD2P2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRPD2P2 Gene

Localization for SNRPD2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNRPD2P2 Gene

Pathways & Interactions for SNRPD2P2 Gene

SuperPathways for SNRPD2P2 Gene

No Data Available

Interacting Proteins for SNRPD2P2 Gene

Gene Ontology (GO) - Biological Process for SNRPD2P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNRPD2P2 Gene

Drugs & Compounds for SNRPD2P2 Gene

No Compound Related Data Available

Transcripts for SNRPD2P2 Gene

mRNA/cDNA for SNRPD2P2 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNRPD2P2 Gene

Small nuclear ribonucleoprotein D2 pseudogene 2:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNRPD2P2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPD2P2 Gene

No ASD Table

Relevant External Links for SNRPD2P2 Gene

GeneLoc Exon Structure for
SNRPD2P2
ECgene alternative splicing isoforms for
SNRPD2P2

Expression for SNRPD2P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNRPD2P2 Gene

mRNA differential expression in normal tissues according to GTEx for SNRPD2P2 Gene

This gene is overexpressed in Testis (x48.0).

NURSA nuclear receptor signaling pathways regulating expression of SNRPD2P2 Gene:

SNRPD2P2

SOURCE GeneReport for Unigene cluster for SNRPD2P2 Gene:

Hs.382049
genes like me logo Genes that share expression patterns with SNRPD2P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNRPD2P2 Gene

Orthologs for SNRPD2P2 Gene

Evolution for SNRPD2P2 Gene

ENSEMBL:
Gene Tree for SNRPD2P2 (if available)
TreeFam:
Gene Tree for SNRPD2P2 (if available)

No data available for Orthologs for SNRPD2P2 Gene

Paralogs for SNRPD2P2 Gene

No data available for Paralogs for SNRPD2P2 Gene

Variants for SNRPD2P2 Gene

Sequence variations from dbSNP and Humsavar for SNRPD2P2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000540154 -- 231,475,794(+) AGAAA(C/G)AGAAT nc-transcript-variant
rs1000851752 -- 231,478,379(+) ATTCA(G/T)GCTAA upstream-variant-2KB
rs1000925335 -- 231,478,121(+) GTGTG(A/T)CTTCT upstream-variant-2KB
rs1001430721 -- 231,475,308(+) TTTTT(C/G)TATTT downstream-variant-500B
rs1001856881 -- 231,476,681(+) TGTGA(A/G)CATTT upstream-variant-2KB

Relevant External Links for SNRPD2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRPD2P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNRPD2P2 Gene

Disorders for SNRPD2P2 Gene

Relevant External Links for SNRPD2P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNRPD2P2

No disorders were found for SNRPD2P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNRPD2P2 Gene

Publications for SNRPD2P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SNRPD2P2 Gene

Sources for SNRPD2P2 Gene

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