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Aliases for SNRPD2P2 Gene

Subcategory (RNA class) for SNRPD2P2 Gene

lncRNA

Aliases for SNRPD2P2 Gene

  • Small Nuclear Ribonucleoprotein D2 Pseudogene 2 2 3 5

External Ids for SNRPD2P2 Gene

ORGUL Members for SNRPD2P2 Gene

Previous GeneCards Identifiers for SNRPD2P2 Gene

  • GC01M231614
  • GC01M202094

Summaries for SNRPD2P2 Gene

GeneCards Summary for SNRPD2P2 Gene

SNRPD2P2 (Small Nuclear Ribonucleoprotein D2 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRPD2P2 Gene

Genomics for SNRPD2P2 Gene

Regulatory Elements for SNRPD2P2 Gene

Enhancers for SNRPD2P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G231493 1.1 FANTOM5 ENCODE 0.4 -17.0 -17013 0.8 HDAC1 CTCF ATF1 ETV1 ZNF195 RELA ZNF121 NR2F6 PRDM10 RELB EXOC8 GC01M231493 SNRPD2P2
GH01G231460 0.9 ENCODE 0.4 +15.7 15716 0.2 HDAC1 ATF1 BMI1 ZNF335 ZNF766 GLIS2 RELB IKZF2 CBFB JUNB SNRPD2P2 EGLN1
GH01G231486 0.7 ENCODE 0.4 -10.7 -10671 0.8 ELF3 GATAD2A FOXA2 SAP130 MLX FOXA3 TEAD3 JUND NCOR1 CEBPA SPRTN GC01M231493 SNRPD2P2
GH01G231494 0.6 FANTOM5 0.4 -18.1 -18127 0.2 RAD51 FOXA2 ZNF512 USF2 FOXJ2 TSNAX GC01M231493 SNRPD2P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNRPD2P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNRPD2P2 Gene

Chromosome:
1
Start:
231,475,762 bp from pter
End:
231,476,525 bp from pter
Size:
764 bases
Orientation:
Minus strand

Genomic View for SNRPD2P2 Gene

Genes around SNRPD2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPD2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPD2P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPD2P2 Gene

Proteins for SNRPD2P2 Gene

Post-translational modifications for SNRPD2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNRPD2P2 Gene

Domains & Families for SNRPD2P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNRPD2P2 Gene

Function for SNRPD2P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRPD2P2 Gene

Localization for SNRPD2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNRPD2P2 Gene

Pathways & Interactions for SNRPD2P2 Gene

SuperPathways for SNRPD2P2 Gene

No Data Available

Interacting Proteins for SNRPD2P2 Gene

Gene Ontology (GO) - Biological Process for SNRPD2P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNRPD2P2 Gene

Drugs & Compounds for SNRPD2P2 Gene

No Compound Related Data Available

Transcripts for SNRPD2P2 Gene

mRNA/cDNA for SNRPD2P2 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNRPD2P2 Gene

Small nuclear ribonucleoprotein D2 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPD2P2 Gene

No ASD Table

Relevant External Links for SNRPD2P2 Gene

GeneLoc Exon Structure for
SNRPD2P2
ECgene alternative splicing isoforms for
SNRPD2P2

Expression for SNRPD2P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNRPD2P2 Gene

mRNA differential expression in normal tissues according to GTEx for SNRPD2P2 Gene

This gene is overexpressed in Testis (x48.0).

NURSA nuclear receptor signaling pathways regulating expression of SNRPD2P2 Gene:

SNRPD2P2

SOURCE GeneReport for Unigene cluster for SNRPD2P2 Gene:

Hs.382049
genes like me logo Genes that share expression patterns with SNRPD2P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNRPD2P2 Gene

Orthologs for SNRPD2P2 Gene

Evolution for SNRPD2P2 Gene

ENSEMBL:
Gene Tree for SNRPD2P2 (if available)
TreeFam:
Gene Tree for SNRPD2P2 (if available)

No data available for Orthologs for SNRPD2P2 Gene

Paralogs for SNRPD2P2 Gene

No data available for Paralogs for SNRPD2P2 Gene

Variants for SNRPD2P2 Gene

Sequence variations from dbSNP and Humsavar for SNRPD2P2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000540154 -- 231,475,794(+) AGAAA(C/G)AGAAT nc-transcript-variant
rs1000851752 -- 231,478,379(+) ATTCA(G/T)GCTAA upstream-variant-2KB
rs1000925335 -- 231,478,121(+) GTGTG(A/T)CTTCT upstream-variant-2KB
rs1001430721 -- 231,475,308(+) TTTTT(C/G)TATTT downstream-variant-500B
rs1001856881 -- 231,476,681(+) TGTGA(A/G)CATTT upstream-variant-2KB

Relevant External Links for SNRPD2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRPD2P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNRPD2P2 Gene

Disorders for SNRPD2P2 Gene

Relevant External Links for SNRPD2P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNRPD2P2

No disorders were found for SNRPD2P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNRPD2P2 Gene

Publications for SNRPD2P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNRPD2P2 Gene

Sources for SNRPD2P2 Gene

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