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Aliases for SNRPD2P2 Gene

Subcategory (RNA class) for SNRPD2P2 Gene

lncRNA

Aliases for SNRPD2P2 Gene

  • Small Nuclear Ribonucleoprotein D2 Pseudogene 2 2 3 5

External Ids for SNRPD2P2 Gene

ORGUL Members for SNRPD2P2 Gene

Previous GeneCards Identifiers for SNRPD2P2 Gene

  • GC01M231614
  • GC01M202094

Summaries for SNRPD2P2 Gene

GeneCards Summary for SNRPD2P2 Gene

SNRPD2P2 (Small Nuclear Ribonucleoprotein D2 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRPD2P2 Gene

Genomics for SNRPD2P2 Gene

Regulatory Elements for SNRPD2P2 Gene

Enhancers for SNRPD2P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F231418 0.6 ENCODE 16.3 +55.3 55321 5.5 HDGF MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS C1orf131 COG2 SNRPD2P2 RN7SL837P RPS24P4 LINC01737 EGLN1 SPRTN PIR59803
GH01F231733 0.7 FANTOM5 16.2 -256.9 -256894 0.8 ZNF792 ZNF133 ZNF175 ZNF140 ZNF514 ZNF157 ZNF169 ZNF239 ZNF548 ZNF680 C1orf131 SNRPD2P2 RN7SL837P LINC01745 GC01P231693 ENSG00000274121
GH01F231335 1 Ensembl ENCODE 16.2 +138.2 138221 5.6 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SNRPD2P2 RN7SL837P RPS24P4 LINC01737 LINC00582 EGLN1 DISC1 SPRTN EXOC8 PIR59803
GH01F231486 0.2 ENCODE 0.4 -10.7 -10671 0.8 GATAD2A ELF3 SAP130 MLX FOXA3 TEAD3 JUND CEBPA HOMEZ SPRTN GC01M231493 SNRPD2P2
GH01F231493 1.3 FANTOM5 Ensembl ENCODE 0.3 -17.0 -17033 0.9 CTCF ATF1 RELA ZNF121 PRDM10 NR2F6 ZBTB20 RFX1 ZNF362 MTA2 EXOC8 GC01M231493 SNRPD2P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNRPD2P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNRPD2P2 Gene

Chromosome:
1
Start:
231,475,762 bp from pter
End:
231,476,525 bp from pter
Size:
764 bases
Orientation:
Minus strand

Genomic View for SNRPD2P2 Gene

Genes around SNRPD2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRPD2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRPD2P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRPD2P2 Gene

Proteins for SNRPD2P2 Gene

Post-translational modifications for SNRPD2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNRPD2P2 Gene

Domains & Families for SNRPD2P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNRPD2P2 Gene

Function for SNRPD2P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRPD2P2 Gene

Localization for SNRPD2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNRPD2P2 Gene

Pathways & Interactions for SNRPD2P2 Gene

SuperPathways for SNRPD2P2 Gene

No Data Available

Interacting Proteins for SNRPD2P2 Gene

Gene Ontology (GO) - Biological Process for SNRPD2P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNRPD2P2 Gene

Transcripts for SNRPD2P2 Gene

mRNA/cDNA for SNRPD2P2 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNRPD2P2 Gene

Small nuclear ribonucleoprotein D2 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNRPD2P2 Gene

No ASD Table

Relevant External Links for SNRPD2P2 Gene

GeneLoc Exon Structure for
SNRPD2P2
ECgene alternative splicing isoforms for
SNRPD2P2

Expression for SNRPD2P2 Gene

mRNA expression in normal human tissues for SNRPD2P2 Gene

mRNA differential expression in normal tissues according to GTEx for SNRPD2P2 Gene

This gene is overexpressed in Testis (x48.0).

NURSA nuclear receptor signaling pathways regulating expression of SNRPD2P2 Gene:

SNRPD2P2

SOURCE GeneReport for Unigene cluster for SNRPD2P2 Gene:

Hs.382049
genes like me logo Genes that share expression patterns with SNRPD2P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNRPD2P2 Gene

Orthologs for SNRPD2P2 Gene

Evolution for SNRPD2P2 Gene

ENSEMBL:
Gene Tree for SNRPD2P2 (if available)
TreeFam:
Gene Tree for SNRPD2P2 (if available)

No data available for Orthologs for SNRPD2P2 Gene

Paralogs for SNRPD2P2 Gene

No data available for Paralogs for SNRPD2P2 Gene

Variants for SNRPD2P2 Gene

Sequence variations from dbSNP and Humsavar for SNRPD2P2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111555622 -- 231,475,350(+) AGGAT(A/G)GTCTC downstream-variant-500B
rs111919861 -- 231,478,023(+) GAGGC(C/T)GAGGC upstream-variant-2KB
rs112315279 -- 231,475,295(+) ACACC(C/T)GGCTA downstream-variant-500B
rs112422735 -- 231,475,975(+) TTGTT(A/G)GTGAT nc-transcript-variant
rs112510644 -- 231,476,499(+) GCAGC(A/G)TTTGC nc-transcript-variant

Relevant External Links for SNRPD2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRPD2P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNRPD2P2 Gene

Disorders for SNRPD2P2 Gene

Relevant External Links for SNRPD2P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNRPD2P2

No disorders were found for SNRPD2P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNRPD2P2 Gene

Publications for SNRPD2P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNRPD2P2 Gene

Sources for SNRPD2P2 Gene

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