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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SNRPB Gene

protein-coding   GIFtS: 59
GCID: GC20M002442

small nuclear ribonucleoprotein polypeptides B and B1


(Previous symbol: SNRPB1)
 Explore 10 diseases affiliated with
SNRPB via our new
 Human Malady Compendium 
Biological research products
for SNRPB
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Small Nuclear Ribonucleoprotein Polypeptides B And B11 2     Sm Protein B/B'2 3
COD1 2 3     B Polypeptide Of Sm Protein2
SNRPB11 2 3     Sm-B/Sm-B'1
Sm-B/B'1 2 3     Small Nuclear Ribonucleoprotein Polypeptide B2
SnRNP-B1     Small Nuclear Ribonucleoprotein Polypeptides B And B'2
SmB/SmB'1 2     Small Nuclear Ribonucleoprotein-Associated Proteins B And B'2
SmB/B'2 3     

External Ids:    HGNC: 111531   Entrez Gene: 66282   Ensembl: ENSG000001258357   OMIM: 1822825   UniProtKB: P146783   

Export aliases for SNRPB gene to outside databases

Previous GC identifers: GC20M002430 GC20M002390 GC20M002437 GC20M002392


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SNRPB:
The protein encoded by this gene is one of several nuclear proteins that are found in common among U1, U2, U4/U6, and
U5 small ribonucleoprotein particles (snRNPs). These snRNPs are involved in pre-mRNA splicing, and the encoded protein
may also play a role in pre-mRNA splicing or snRNP structure. Autoantibodies from patients with systemic lupus
erythematosus frequently recognize epitopes on the encoded protein. Two transcript variants encoding different
isoforms (B and B') have been found for this gene. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: RSMB_HUMAN, P14678
Function: Appears to function in the U7 snRNP complex that is involved in histone 3'-end processing. Associated with
snRNP U1, U2, U4/U6 and U5. May have a functional role in the pre-mRNA splicing or in snRNP structure. Binds to the
downstream cleavage product (DCP) of histone pre-mRNA in a U7 snRNP dependent manner (By similarity)

Gene Wiki entry for SNRPB


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000020.10  NC_018931.1  NT_011387.8  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SNRPB gene promoter:
         COUP-TF1   SRF   COUP-TF   SRF (504 AA)   COUP   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSNRPB promoter sequence
   Search SABiosciences Chromatin IP Primers for SNRPB

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SNRPB


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20p13   Ensembl cytogenetic band:  20p13   HGNC cytogenetic band: 20p13

SNRPB Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SNRPB gene location

GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20M002442:  view genomic region     (about GC identifiers)

Start:
2,442,280 bp from pter      End:
2,451,499 bp from pter
Size:
9,220 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RSMB_HUMAN, P14678 (See protein sequence)
Recommended Name: Small nuclear ribonucleoprotein-associated proteins B and B'  
Size: 240 amino acids; 24610 Da
Subunit: Identified in a histone pre-mRNA complex, at least composed of ERI1, LSM11, SLBP, SNRPB, SYNCRIP and YBX1 (By
similarity). Component of the heptameric ring U7 snRNP complex, or U7 Sm protein core complex, at least composed of
LSM10, LSM11, SNRPB, SNRPD3, SNRPE, SNRPF, SNRPG and U7 snRNA. Formation of the U7 snRNP is an ATP-dependent process
mediated by a specialized SMN complex containing at least the Sm protein core complex and additionally, the
U7-specific LSM10 and LSM11 proteins. Identified in the spliceosome C complex. Component of the U11/U12 snRNPs that
are part of the U12-type spliceosome. Interacts with CLNS1A, DDX20, LSM11, TDRD3, SNUPN and SMN1
Subcellular location: Nucleus
Miscellaneous: Patients with the autoimmune disease systemic lupus erythematosus (SLE) have autoantibodies directed
against some of the individual snRNP polypeptides. The most common autoantigen is called Sm. B/b' bear Sm epitopes
Sequence caution: Sequence=AAD54488.1; Type=Erroneous gene model prediction;
6/7 PDB 3D structures from and Proteopedia for SNRPB (see all 7):
1D3B (3D)        2Y9A (3D)        2Y9B (3D)        2Y9C (3D)        2Y9D (3D)        3CW1 (3D)    
Secondary accessions: Q15490 Q6IB35 Q9UIS5
Alternative splicing: 3 isoforms:  P14678-1   P14678-2   P14678-3   

Explore the universe of human proteins at neXtProt for SNRPB: NX_P14678

Post-translational modifications:

  • Methylated. Arg-108 and Arg-112 are dimethylated, probably to asymmetric dimethylarginine1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P14678

  • SNRPB Protein expression data from MOPED and PaxDb:    About this image 
    SNRPB Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_003082.1  NP_937859.1  

    ENSEMBL proteins: 
     ENSP00000370746   ENSP00000412566   ENSP00000342305  
    Reactome Protein details: P14678
    Human Recombinant Protein Products for SNRPB: 
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    Uscn Proteins for SNRPB

    Gene Ontology (GO): 5/10 cellular component terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ----
    GO:0005654nucleoplasm TAS--
    GO:0005681spliceosomal complex TAS2531083
    GO:0005683U7 snRNP IDA11574479
    GO:0005689U12-type spliceosomal complex IDA15146077

    SNRPB for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    SNRPB for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR001163 Ribonucl_LSM
     IPR006649 Ribonucl_LSM_euk/arc
     IPR017131 snRNP-assoc_SmB/SmN
     IPR010920 LSM_dom

    Graphical View of Domain Structure for InterPro Entry P14678

    ProtoNet protein and cluster: P14678

    2 Blocks protein families:
    IPB001163 Small nuclear ribonucleoprotein (Sm protein)
    IPB010920 Like-Sm ribonucleoprotein-related


    UniProtKB/Swiss-Prot: RSMB_HUMAN, P14678
    Similarity: Belongs to the snRNP SmB/SmN family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RSMB_HUMAN, P14678
    Function: Appears to function in the U7 snRNP complex that is involved in histone 3'-end processing. Associated with
    snRNP U1, U2, U4/U6 and U5. May have a functional role in the pre-mRNA splicing or in snRNP structure. Binds to the
    downstream cleavage product (DCP) of histone pre-mRNA in a U7 snRNP dependent manner (By similarity)

         Genatlas biochemistry entry for SNRPB:
    small nuclear ribonucleoprotein,polypeptides B and B1

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI15494309
    GO:0071208histone pre-mRNA DCP binding IEA--
         
    SNRPB for ontologies           About GeneDecksing


    Phenotypes:
         7 GenomeRNAi human phenotypes for SNRPB:
     Cell division defect  Decreased homologous recombina  Decreased influenza A virus in  Decreased viability of wild-ty 
     Increased cell number in G2M,   Increased gamma-H2AX phosphory  Metaphase cells 

    Animal Models:
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    SwitchGear 3'UTR luciferase reporter plasmidSNRPB 3' UTR sequence
    Inhib. RNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/8 super-pathways (see all 8About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1mRNA Splicing - Major Pathway
    mRNA Splicing1.00
    mRNA processing0.48
    mRNA Splicing - Major Pathway1.00
    mRNA Splicing - Minor Pathway0.40
    Processing of Capped Intron-Containing Pre-mRNA0.96
    Spliceosome0.31
    mRNA Processing0.82
    2SLBP independent Processing of Histone Pre-mRNAs
    SLBP independent Processing of Histone Pre-mRNAs1.00
    snRNP Assembly0.28
    SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs0.91
    Metabolism of non-coding RNA0.28
    3RNA Polymerase II Transcription Termination
    RNA Polymerase II Transcription Termination1.00
    Cleavage of Growing Transcript in the Termination Region 1.00
    Post-Elongation Processing of the Transcript1.00
    4Transcription
    Transcription1.00
    RNA Polymerase II Transcription0.69
    5Post-Elongation Processing of Intronless pre-mRNA
    Processing of Capped Intronless Pre-mRNA1.00
    Post-Elongation Processing of Intronless pre-mRNA1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    1 BioSystems Pathway for SNRPB 
        mRNA processing

    5/18        Reactome Pathways for SNRPB (see all 18)
        mRNA Splicing
    RNA Polymerase II Transcription
    snRNP Assembly
    Cleavage of Growing Transcript in the Termination Region
    Metabolism of non-coding RNA


    2         Kegg Pathways  (Kegg details for SNRPB):
        Spliceosome
    Systemic lupus erythematosus


    SNRPB for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SNRPB

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/120 Interacting proteins for SNRPB (P146781, 2, 3 ENSP000004125664) via UniProtKB, MINT, STRING, and/or I2D (see all 120)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CD2BP2O954002, 3, ENSP000003049034MINT-62827 MINT-62831 MINT-62664 MINT-62853 MINT-62655 MINT-62851 MINT-62852 MINT-62850 MINT-62849 MINT-62833 MINT-62652 I2D: score=2 STRING: ENSP00000304903
    SMN1Q166372, 3, ENSP000003700834MINT-14172 MINT-14173 MINT-14174 I2D: score=6 STRING: ENSP00000370083
    GIGYF2Q6Y7W62, 3, ENSP000003871704MINT-65887 MINT-65884 MINT-65888 MINT-65907 I2D: score=2 STRING: ENSP00000387170
    GEMIN4P576782, 3, ENSP000003217064MINT-15055 MINT-15056 I2D: score=5 STRING: ENSP00000321706
    COILP384322, 3, ENSP000002403164MINT-8052983 I2D: score=4 STRING: ENSP00000240316
    About this table

    Gene Ontology (GO): 5/10 biological process terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000387spliceosomal snRNP assembly TAS--
    GO:0000398mRNA splicing, via spliceosome TAS--
    GO:0006366transcription from RNA polymerase II promoter TAS--
    GO:0006369termination of RNA polymerase II transcription TAS--
    GO:0006397mRNA processing TAS--

    SNRPB for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SNRPB
    Search CenterWatch for drugs/clinical trials and news about SNRPB / RSMB 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SNRPB gene (2 alternative transcripts): 
    NM_003091.3  NM_198216.1  

    Unigene Cluster for SNRPB:

    Small nuclear ribonucleoprotein polypeptides B and B1
    Hs.83753  [show with all ESTs]
    Unigene Representative Sequence: BM564070
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000381342(uc002wga.1) ENST00000438552(uc002wfz.1) ENST00000474384
    ENST00000339610(uc010zpv.2 uc002wgb.3 uc010gan.3)

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    hsa-miR-495 hsa-let-7g* hsa-let-7a-2* hsa-miR-1291
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    Inhib. RNA
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    Additional cDNA sequence: 

    AK301034.1 AK301206.1 AK307093.1 AK307266.1 AK312620.1 AY742712.1 BC080516.1 CR456969.1 
    J04564.1 M34081.1 M34082.1 X15893.1 X17567.1 X17568.1 

    24/27 DOTS entries (see all 27):

    DT.100045354  DT.455957  DT.101985257  DT.100042501  DT.95325267  DT.99981347  DT.100880258  DT.95099492 
    DT.100880254  DT.95325250  DT.100880270  DT.102837046  DT.95325254  DT.100880269  DT.120829112  DT.100880264 
    DT.97862682  DT.100880257  DT.450384  DT.95325273  DT.95325431  DT.100880260  DT.120829127  DT.120829147 

    24/1609 AceView cDNA sequences (see all 1609):

    CB145806 CA420343 BF795528 BQ953405 BE734349 CR609487 BG491778 BQ649262 
    AL555129 BM973199 BI913390 BE261371 BE300018 BM811059 BM423463 BU157536 
    BE791198 BQ652994 AA315958 BM766212 CR619703 BG758022 CB148949 AW583222 

    GeneLoc Exon Structure

    5/12 Alternative Splicing Database (ASD) splice patterns (SP) for SNRPB (see all 12)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b
    SP1:                          -     -     -           -     -     -     -     -                                                         
    SP2:                          -     -     -           -     -     -     -     -                                         -               
    SP3:                          -     -     -           -     -     -     -     -                                                         
    SP4:                                      -           -     -                                                                           
    SP5:                                      -           -     -     -     -     -                                                         


    ECgene alternative splicing isoforms for SNRPB

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SNRPB expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GGATTGTCTG
    SNRPB Expression
    About this image
    See SNRPB Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SNRPB

    SOURCE GeneReport for Unigene cluster: Hs.83753
        SABiosciences Custom PCR Arrays for SNRPB

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SNRPB gene from 9/28 species (see all 28)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Snrpb1 , 5 small nuclear ribonucleoprotein B1, 5 91.85(n)1
    99.56(a)1
      2 (63.19 cM)5
    206381  NM_009225.21  NP_033251.11 
     1301714145 
    chicken
    (Gallus gallus)
    Aves SNRPB1 small nuclear ribonucleoprotein polypeptides B and more 80.28(n)
    96.25(a)
      395298  NM_204599.1  NP_989930.1 
    lizard
    (Anolis carolinensis)
    Reptilia SNRPN6
    --
    95(a)
    1 → many
    GL343820.1(160742-166218)
    African clawed frog
    (Xenopus laevis)
    Amphibia snrpn-prov2 small nuclear ribonucleoparticle-associated protein more 76.29(n)    BC041275.1 
    zebrafish
    (Danio rerio)
    Actinopterygii snrpb1 small nuclear ribonucleoprotein polypeptides B and more 77.12(n)
    95.76(a)
      402966  NM_205667.1  NP_991230.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta SmB1 , 3 mRNA splicing3
    Small ribonucleoprotein particle protein SmB1
    70(a)3
    60.91(n)1
    67.01(a)1
      31E13
    344261  NM_001201851.11  NP_001188780.11 
    worm
    (Caenorhabditis elegans)
    Secernentea snr-26
    Probable small nuclear ribonucleoprotein-associate...
    54(a)
    1 → many
    I(13339384-13340216)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons smB1 small nuclear ribonucleoprotein associated protein more 56.98(n)
    60.35(a)
      827792  NM_001160786.1  NP_001154258.1 
    rice
    (Oryza sativa)
    Liliopsida Os07g01666001 hypothetical protein 57.45(n)
    60.43(a)
      9270807  NM_001188139.1  NP_001175068.1 


    ENSEMBL Gene Tree for SNRPB (if available)
    TreeFam Gene Tree for SNRPB (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SNRPB gene
    SNRPN2  
    3 SIMAP similar genes for SNRPB using alignment to 6 protein entries:     RSMB_HUMAN (see all proteins):
    SNRPN    NAA38    LSM8

    SNRPB for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for SNRPB
    PGOHUM00000246309


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/223 NCBI SNPs in SNRPB are shown (see all 223    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 20 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1869612801,2
    --2441866(+) CTGCTC/TAGTGA 2 -- ds50010--------
    rs1428409601,2
    --2441959(+) GCAGAA/TAGTTA 2 -- ds50010--------
    rs1460942741,2
    --2442016(+) GCTTCA/GTGGAG 2 -- ds50010--------
    rs60492121,2
    C,F,H--2442022(+) TGGAGG/AAGCTA 2 -- ds500122Minor allele frequency- A:0.05NS EA NA WA CSA 1870
    rs745409121,2
    --2442096(+) ATCTGA/GTAAGT 2 -- ds50011Minor allele frequency- G:0.01EA 120
    rs1171547811,2
    C--2442149(+) ACAGAT/CGCAAA 2 -- ds50011Minor allele frequency- C:0.01NA 120
    rs1487575681,2
    --2442252(+) TCAAAG/TATTTT 2 -- ds50010--------
    rs60492161,2
    C,F,A,H--2442273(+) AAGATA/CCATAG 2 -- ds500129Minor allele frequency- C:0.10NS EA NA WA CSA 2499
    rs1906421681,2
    C--2442363(+) CCTTAA/CGGGAA 2 -- ut310--------
    rs1825224841,2
    C--2442397(+) CAAGAC/TGAGTC 2 -- ut310--------

    HapMap Linkage Disequilibrium report for SNRPB (2442280 - 2451499 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for SNRPB
         2 CNVs: 90442 4091

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    SNRPB for disorders           About GeneDecksing

    OMIM gene information: 182282    OMIM disorders: --

    10 diseases for SNRPB:    About MalaCards
    systemic lupus erythematosus    lupus erythematosus    spinal muscular atrophy    muscular atrophy
    mutism    celiac disease    breast cancer    malaria
    neuronitis    herpes simplex

    Human Genome Epidemiology (HuGE) Navigator: SNRPB (1 document)

    Export disorders for SNRPB gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SNRPB gene, integrated from 9 sources (see all 89):
    (articles sorted by number of sources associating them with SNRPB)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Toward an assembly line for U7 snRNPs: interactions of U7-specific Lsm proteins with PRMT5 and SMN complexes. (PubMed id 16087681)1, 2 Azzouz T.N.... Schuemperli D. (2005)
    2. The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. (PubMed id 15146077)1, 2 Will C.L.... Luehrmann R. (2004)
    3. Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. (PubMed id 12975319)1, 2 Pillai R.S.... Schuemperli D. (2003)
    4. Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. (PubMed id 11991638)1, 2 Jurica M.S.... Moore M.J. (2002)
    5. SMN, the spinal muscular atrophy protein, forms a pre-import snRNP complex with snurportin1 and importin beta. (PubMed id 12095920)1, 2 Narayanan U.... Matera A.G. (2002)
    6. Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein. (PubMed id 11574479)1, 2 Pillai R.S.... Mueller B. (2001)
    7. The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
    8. Concerted regulation and molecular evolution of the duplicated SNRPB'/B and SNRPN loci. (PubMed id 10556313)1, 2 Gray T.A.... Nicholls R.D. (1999)
    9. Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. (PubMed id 10025403)1, 2 Kambach C.... Nagai K. (1999)
    10. The murine gene encoding the highly conserved Sm B protein contains a nonfunctional alternative 3' splice site. (PubMed id 1376292)1, 3 Griffith A.J....Craft J. (1992)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 6628 HGNC: 11153 AceView: SNRPBandMGC10715 Ensembl:ENSG00000125835 euGenes: HUgn6628
    ECgene: SNRPB Kegg: 6628 H-InvDB: SNRPB

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SNRPB Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SNRPB gene:
    Search GeneIP for patents involving SNRPB

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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