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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SNRPA1 Gene

protein-coding   GIFtS: 61
GCID: GC15M101821

small nuclear ribonucleoprotein polypeptide A'
 Explore 3 diseases affiliated with
SNRPA1 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for SNRPA1    

Aliases
for SNRPA1 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Small Nuclear Ribonucleoprotein Polypeptide A'1 2
Lea11 2
U2 SnRNP A'2 3
U2 Small Nuclear Ribonucleoprotein A'2
U2 Small Nuclear Ribonucleoprotein Polypeptide A'2

External Ids:    HGNC: 111521   Entrez Gene: 66272   Ensembl: ENSG000001318767   OMIM: 6035215   UniProtKB: P096613   

Export aliases for SNRPA1 gene to outside databases

Previous GC identifers: GC15M098673 GC15M095663 GC15M099414 GC15M099556 GC15M099553 GC15M099639 GC15M077944


Summaries
for SNRPA1 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: RU2A_HUMAN, P09661
Function: This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA

Gene Wiki entry for SNRPA1


Genomic Views
for SNRPA1 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000015.9  NC_018926.1  NT_010274.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SNRPA1 gene promoter:
         POU2F2 (Oct-2.1)   Oct-B1   oct-B3   oct-B2   POU2F2   AREB6   IRF-2   POU2F1   POU2F1a   POU2F2B   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SNRPA1 promoter sequence
   Search SABiosciences Chromatin IP Primers for SNRPA1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SNRPA1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q26.3   Ensembl cytogenetic band:  15q26.3   HGNC cytogenetic band: 15q26.3

SNRPA1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SNRPA1 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M101821:  view genomic region     (about GC identifiers)

Start:
 101,821,715 bp from pter      End:
 101,835,487 bp from pter
Size:
 13,773 bases      Orientation:
 minus strand

Proteins
for SNRPA1 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: RU2A_HUMAN, P09661 (See protein sequence)
Recommended Name: U2 small nuclear ribonucleoprotein A'  
Size: 255 amino acids; 28416 Da
Subunit: Identified in the spliceosome C complex. Found in a pre-mRNA splicing complex with SFRS4, SFRS5, SNRNP70,
SNRPA1, SRRM1 and SRRM2. Found in a pre-mRNA exonic splicing enhancer (ESE) complex with SNRNP70, SNRPA1, SRRM1 and
TRA2B
Subcellular location: Nucleus
1 PDB 3D structure from and Proteopedia for SNRPA1:
1A9N (3D)    
Secondary accessions: B2R5I6 Q8TBD2

Explore the universe of human proteins at neXtProt for SNRPA1: NX_P09661

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P09661

    • SNRPA1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_003081.2  
    ENSEMBL proteins: 
     ENSP00000254193   ENSP00000452836   ENSP00000453309   ENSP00000453521  
    Reactome Protein details: P09661
    Human Recombinant Protein Products: 
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    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: SNRPA1
    OriGene Custom Protein Services for SNRPA1 
    GenScript Custom Purified and Recombinant Proteins Services for SNRPA1
    Novus Biologicals SNRPA1 Proteins
    Novus Biologicals SNRPA1 Lysates
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for SNRPA1
    Uscn Proteins for SNRPA1

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005654nucleoplasm TAS--
    GO:0005681spliceosomal complex IDA9731529
    GO:0005686U2 snRNP TAS2928112
    GO:0030529ribonucleoprotein complex ----
    GO:0030532small nuclear ribonucleoprotein complex TAS2928112


    SNRPA1 for ontologies           About GeneDecksing



    SNRPA1 Antibody Products: 
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    ThermoFisher Antibodies for SNRPA1

    Assay Products for SNRPA1: 
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    Uscn ELISAs and CLIAs for SNRPA1

    Protein Domains /
    Families
    for SNRPA1 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    SNRPA1 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR003603 U2A'_phosphoprotein32A_C
     IPR001611 Leu-rich_rpt

    Graphical View of Domain Structure for InterPro Entry P09661

    ProtoNet protein and cluster: P09661

    1 Blocks protein family: IPB003603 Leucine-rich-associated

    UniProtKB/Swiss-Prot: RU2A_HUMAN, P09661
    Similarity: Belongs to the U2 small nuclear ribonucleoprotein A family
    Similarity: Contains 4 LRR (leucine-rich) repeats
    Similarity: Contains 1 LRRCT domain


    Function
    for SNRPA1 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: RU2A_HUMAN, P09661
    Function: This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA

    miRNA
    Products:            		 OriGene 3'-UTR Clone: SNRPA1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SNRPA1
    4 QIAGEN miScript miRNA Assays for microRNAs that regulate SNRPA1:
    hsa-miR-607 hsa-miR-520d-5p hsa-miR-3674 hsa-miR-524-5p
    SwitchGear 3'UTR luciferase reporter plasmid: SNRPA1 3' UTR sequence
    Inhib. RNA
    Products:            		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SNRPA1 (see all 4)
    OriGene shRNA RFP: SNRPA1
    Browse OriGene siRNA
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SNRPA1

    Gene Editing
    Products:    		DNA2.0 Custom Protein Engineering Service for SNRPA1

    Clone
    Products:             		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SNRPA1 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SNRPA1
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: SNRPA1 (NM_003090)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for SNRPA1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SNRPA1 

    Cell Line
    Products:             		GenScript Custom overexpressing Cell Line Services for SNRPA1
    Search LifeMap BioReagents cell lines for SNRPA1

    In Situ Assay
    Products:       
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNRPA1

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003723RNA binding IEA--
    GO:0005515protein binding IPI9716128


    SNRPA1 for ontologies           About GeneDecksing


    5 GenomeRNAi human phenotypes for SNRPA1:
     Cell division defect  Decreased Salmonella enterica   Increased G2M DNA content  Increased gamma-H2AX phosphory 
     Increased number of mitotic ce 


    Pathways & Interactions
    for SNRPA1 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1mRNA Splicing - Major Pathway
    		mRNA Splicing1.00
    		mRNA Processing0.82
    		mRNA Splicing - Major Pathway1.00
    		mRNA processing0.48
    		Processing of Capped Intron-Containing Pre-mRNA0.96
    		Spliceosome0.31
    2Generic Transcription Pathway
    		Gene Expression0.46

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    1 BioSystems Pathway for SNRPA1 
        mRNA processing

    5        Reactome Pathways for SNRPA1
        mRNA Splicing - Major Pathway
    mRNA Splicing
    Gene Expression
    mRNA Processing
    Processing of Capped Intron-Containing Pre-mRNA


    1         Kegg Pathway  (Kegg details for SNRPA1):
        Spliceosome


    SNRPA1 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SNRPA1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/610 Interacting proteins for SNRPA1 (P096612, 3 ENSP000002541934) via UniProtKB, MINT, STRING, and/or I2D (see all 610)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SNRPB2P085792, 3, ENSP000002460714MINT-8332592 MINT-8333350 I2D: score=4 STRING: ENSP00000246071
    SF3A2Q154282, 3, ENSP000002214944MINT-5205422 MINT-7947479 I2D: score=2 STRING: ENSP00000221494
    SMN1Q166372, 3, ENSP000003700834MINT-7947479 I2D: score=2 STRING: ENSP00000370083
    SMN2Q166372, 3, ENSP000003701194MINT-7947479 I2D: score=2 STRING: ENSP00000370119
    CDC5LQ994592, 3, ENSP000003605324MINT-7947479 I2D: score=1 STRING: ENSP00000360532
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000398mRNA splicing, via spliceosome TAS--
    GO:0008380RNA splicing TAS--
    GO:0010467gene expression TAS--


    SNRPA1 for ontologies           About GeneDecksing



    Drugs & Compounds
    for SNRPA1 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SNRPA1
    Search CenterWatch for drugs/clinical trials and news about SNRPA1 / RU2A 

    Transcripts
    for SNRPA1 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for SNRPA1 gene: 
    NM_003090.2  

    Unigene Cluster for SNRPA1:

    Small nuclear ribonucleoprotein polypeptide A'
    Hs.528763  [show with all ESTs]
    Unigene Representative Sequence: AK090986
    15 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000254193(uc002bww.3 uc002bwx.3 uc010bpc.3) ENST00000560307
    ENST00000559309 ENST00000558036 ENST00000560433 ENST00000394082 ENST00000540017
    ENST00000560496 ENST00000559686 ENST00000560383 ENST00000558059 ENST00000560987
    ENST00000560856 ENST00000558020 ENST00000561187

    miRNA
    Products:             		 OriGene 3'-UTR Clone: SNRPA1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SNRPA1
    4 QIAGEN miScript miRNA Assays for microRNAs that regulate SNRPA1:
    hsa-miR-607 hsa-miR-520d-5p hsa-miR-3674 hsa-miR-524-5p
    SwitchGear 3'UTR luciferase reporter plasmid: SNRPA1 3' UTR sequence
    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SNRPA1 (see all 4)
    OriGene shRNA RFP: SNRPA1
    Browse OriGene siRNA
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SNRPA1
    Clone
    Products:             		 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SNRPA1 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SNRPA1
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: SNRPA1 (NM_003090)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for SNRPA1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SNRPA1 
    Primer
    Products:            		 OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SNRPA1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat SNRPA1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SNRPA1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SNRPA1

    Additional cDNA sequence: 

    AJ130971.1 AJ130972.1 AK090986.1 AK223070.1 AK223110.1 AK290078.1 AK312200.1 BC022816.1 
    BC067846.1 BC071717.1 X13482.1 

    23 DOTS entries:

    DT.316304  DT.102819753  DT.100821393  DT.75103673  DT.100773186  DT.120946756  DT.207204  DT.95287459 
    DT.100028428  DT.100821397  DT.121014148  DT.92439890  DT.95287446  DT.95287471  DT.121014134  DT.121014138 
    DT.91935841  DT.91973037  DT.95287447  DT.95287463  DT.102819752  DT.120946761  DT.95235756 

    24/242 AceView cDNA sequences (see all 242):

    BU077450 BE674941 CB107988 BM717368 BX381295 CR618367 BU676431 CA771934 
    AA974400 AW873991 AA908433 AI354841 N47322 BM847072 BX102197 BE719117 
    CD251339 CR616055 BU150119 BG112537 BC022816 BM702193 BI089073 CA420435 

    GeneLoc Exon Structure


    Expression
    for SNRPA1 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SNRPA1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTATAATAGC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    SNRPA1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    LiverLiver LobuleLiver
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See SNRPA1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SNRPA1

    SOURCE GeneReport for Unigene cluster: Hs.528763
        SABiosciences Custom PCR Arrays for SNRPA1
    Primer
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SNRPA1
    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNRPA1

    Orthologs
    for SNRPA1 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SNRPA1 gene from 9/34 species (see all 34)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Snrpa11 , 5 small nuclear ribonucleoprotein polypeptide A'1, 5 91.5(n)1
    98.04(a)1    		   7 (35.47 cM)5
    689811  NM_021336.41  NP_067311.41 
     660602995 
    chicken
    (Gallus gallus)    		 Aves SNRPA11 small nuclear ribonucleoprotein polypeptide A' 82.09(n)
    91.37(a)    		   415523  NM_001005823.1  NP_001005823.1 
    lizard
    (Anolis carolinensis)    		 Reptilia SNRPA16
    		 --
    		 88(a)
    		 1 ↔ 1
    		 GL343941.1(16065-26283)
    African clawed frog
    (Xenopus laevis)    		 Amphibia Xl.237862 Xenopus laevis transcribed sequence with moderate similarity more 78.29(n)    CA983301.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii snrpa11 small nuclear ribonucleoprotein polypeptide A' 77.41(n)
    90(a)    		   492511  NM_001007383.1  NP_001007384.1 
    fruit fly
    (Drosophila melanogaster)    		 Insecta U2A1 , 3 mRNA splicing RNA binding3
    CG1406-PA1    		 53(a)3
    56.28(n)1
    55.84(a)1    		   43E93
    357131  NM_136471.31  NP_610315.11 
    worm
    (Caenorhabditis elegans)    		 Secernentea H20J04.83
    mog-21    		 Protein MOG-21 47(a)3
    55.2(n)1
    48.58(a)1    		   II(4324365-4325865)3
    1737671  NM_062362.21  NP_494763.11 
    thale cress
    (Arabidopsis thaliana)    		 eudicotyledons U2A'1 U2 small nuclear ribonucleoprotein A' 53.09(n)
    51.21(a)    		   837505  NM_100848.4  NP_172447.1 
    rice
    (Oryza sativa)    		 Liliopsida Os02g02348001 hypothetical protein 58.3(n)
    53.44(a)    		   4328823  NM_001052918.1  NP_001046383.1 


    ENSEMBL Gene Tree for SNRPA1 (if available)
    TreeFam Gene Tree for SNRPA1 (if available) 

    Paralogs
    for SNRPA1 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SNRPA1 gene

    SNRPA1 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for SNRPA1
    PGOHUM00000246357


    Genomic Variants
    for SNRPA1 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/371 NCBI SNPs in SNRPA1 are shown (see all 371)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 15 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs1839096991,2
    		--101821371(+) TGGGAA/GGCCAA 1 -- int10--------
    rs1402370201,2
    		--101821457(+) GGTTTA/GGTGGG 1 -- int10--------
    rs1504502871,2
    		--101821516(+) AAGCCA/GGAGCG 1 -- int10--------
    rs80364131,2
    		H--101821520(+) CGGAGC/TGACAG 1 -- int14Minor allele frequency- T:0.00NS EA 418
    rs1382844731,2
    		--101821568(+) AAAAGC/GCGGCC 1 -- int10--------
    rs49658151,2
    		C,F,H,--101821609(+) CCAGAC/TGCTAA 1 -- int120Minor allele frequency- T:0.11NS EA NA 2446
    rs1886817261,2
    		--101821629(+) GGAAGC/GCTACC 1 -- int10--------
    rs1818055031,2
    		--101821635(+) CTACCA/GAGAAA 1 -- int10--------
    rs10508451,2
    		C,H--101821794(-) TGATAA/GTTTTG 1 -- ut313Minor allele frequency- G:0.01NS NA 226
    rs740419611,2
    		C,F,--101821912(+) TATTAT/CACATC 1 -- ut312Minor allele frequency- C:0.00WA EU 1325

    HapMap Linkage Disequilibrium report for SNRPA1 (101821715 - 101835487 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for SNRPA1
         3 CNVs: 3983 8807 3099

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    Disorders / Diseases
    for SNRPA1 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    SNRPA1 for disorders           About GeneDecksing

    OMIM gene information: 603521    OMIM disorders: --

    3 diseases for SNRPA1:    About MalaCards
    pasteurellosis    immunodeficiency    malaria

    1 disease from the University of Copenhagen DISEASES database for SNRPA1:
    Pasteurellosis

    Export disorders for SNRPA1 gene to outside databases

    Publications
    for SNRPA1 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SNRPA1 gene, integrated from 9 sources (see all 46):
    (articles sorted by number of sources associating them with SNRPA1)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning of the cDNA for the human U2 snRNA-specific A' protein. (PubMed id 2928112)1, 2, 3 Sillekens P.T.G.... van Venrooij W.J. (1989)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. (PubMed id 11991638)1, 2 Jurica M.S.... Moore M.J. (2002)
    5. The SRm160/300 splicing coactivator is required for exon-enhancer function. (PubMed id 10339552)1, 2 Eldridge A.G.... Blencowe B.J. (1999)
    6. Crystal structure of the spliceosomal U2B'-U2A' protein complex bound to a fragment of U2 small nuclear RNA. (PubMed id 9716128)1, 2 Price S.R.... Nagai K. (1998)
    7. A coactivator of pre-mRNA splicing. (PubMed id 9531537)1, 2 Blencowe B.J.... Sharp P.A. (1998)
    8. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    9. A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    External Searches for SNRPA1 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
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    Genome Databases showing SNRPA1 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 6627 HGNC: 11152 AceView: SNRPA1 Ensembl:ENSG00000131876 euGenes: HUgn6627
    ECgene: SNRPA1 Kegg: 6627 H-InvDB: SNRPA1

    Other Databases showing SNRPA1 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing SNRPA1 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SNRPA1 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for SNRPA1 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for SNRPA1 gene:
    Search GeneIP for patents involving SNRPA1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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