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Aliases for SNRK-AS1 Gene

Subcategory (RNA class) for SNRK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNRK-AS1 Gene

  • SNRK Antisense RNA 1 2 3 5
  • SNRK Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SNRK-AS1 Gene

Previous GeneCards Identifiers for SNRK-AS1 Gene

  • GC00U933780

Summaries for SNRK-AS1 Gene

GeneCards Summary for SNRK-AS1 Gene

SNRK-AS1 (SNRK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNRK-AS1 Gene

Genomics for SNRK-AS1 Gene

Regulatory Elements for SNRK-AS1 Gene

Enhancers for SNRK-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G043387 1.8 FANTOM5 Ensembl ENCODE dbSUPER 17.1 -38.0 -37997 4.4 HDAC1 FOXA2 ZBTB40 RAD21 YY1 GATA2 FOS ETV6 ZBTB11 CEBPB SNRK ABHD5 SNRK-AS1 ENSG00000271941 ANO10 ENSG00000251811
GH03G043392 1.4 FANTOM5 Ensembl ENCODE dbSUPER 16.3 -42.1 -42074 2.5 JUN ETV1 ZNF175 MAX RAD21 NR2F2 GATA2 FOS MYC SNRK SNRK-AS1 ABHD5 ANO10 ENSG00000251811
GH03G043178 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +171.7 171732 3.7 FOXA2 MLX ARID4B YY1 GTF3C2 SLC30A9 GATA2 FOS JUNB MIER2 SNRK-AS1 ACKR2 CCDC13 SNRK GC03P043189 LOC105377051
GH03G043316 1.4 Ensembl ENCODE dbSUPER 12 +34.1 34126 2.3 ELF3 ATF1 FOXA2 DNMT3B RAD21 RARA YY1 GATA4 CREM MIXL1 SNRK-AS1 SNRK ABHD5 RN7SL517P ENSG00000271941
GH03G043325 1.2 Ensembl ENCODE dbSUPER 13.1 +24.6 24579 3.2 HDAC1 CTCF PKNOX1 NR2F1 HLF CEBPB CEBPG PRDM6 ZNF766 PBX2 SNRK-AS1 SNRK ANO10 RN7SL517P ENSG00000271941
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNRK-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNRK-AS1 Gene

Chromosome:
3
Start:
43,346,919 bp from pter
End:
43,351,962 bp from pter
Size:
5,044 bases
Orientation:
Minus strand

Genomic View for SNRK-AS1 Gene

Genes around SNRK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNRK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNRK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNRK-AS1 Gene

Proteins for SNRK-AS1 Gene

Post-translational modifications for SNRK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNRK-AS1 Gene

Domains & Families for SNRK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNRK-AS1 Gene

Function for SNRK-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNRK-AS1 Gene

Localization for SNRK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNRK-AS1 Gene

Pathways & Interactions for SNRK-AS1 Gene

SuperPathways for SNRK-AS1 Gene

No Data Available

Interacting Proteins for SNRK-AS1 Gene

Gene Ontology (GO) - Biological Process for SNRK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNRK-AS1 Gene

Transcripts for SNRK-AS1 Gene

mRNA/cDNA for SNRK-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNRK-AS1 Gene

SNRK antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNRK-AS1 Gene

No ASD Table

Relevant External Links for SNRK-AS1 Gene

GeneLoc Exon Structure for
SNRK-AS1
ECgene alternative splicing isoforms for
SNRK-AS1

Expression for SNRK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNRK-AS1 Gene

SOURCE GeneReport for Unigene cluster for SNRK-AS1 Gene:

Hs.600984
genes like me logo Genes that share expression patterns with SNRK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNRK-AS1 Gene

Orthologs for SNRK-AS1 Gene

Evolution for SNRK-AS1 Gene

ENSEMBL:
Gene Tree for SNRK-AS1 (if available)
TreeFam:
Gene Tree for SNRK-AS1 (if available)

No data available for Orthologs for SNRK-AS1 Gene

Paralogs for SNRK-AS1 Gene

No data available for Paralogs for SNRK-AS1 Gene

Variants for SNRK-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNRK-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000250293 -- 43,351,725(+) TCTCA(C/T)TTCTG nc-transcript-variant
rs1000301110 -- 43,351,578(+) TCTTG(C/T)GCCCT intron-variant, downstream-variant-500B
rs1000388663 -- 43,350,882(+) ATTAT(C/G)TACTT intron-variant, utr-variant-3-prime
rs1000635277 -- 43,349,855(+) TGCCC(C/T)GGGAG nc-transcript-variant, utr-variant-3-prime
rs1002250436 -- 43,348,691(+) TGTTC(A/G)CCTGA nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SNRK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3596011 CNV gain 21293372

Relevant External Links for SNRK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNRK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNRK-AS1 Gene

Disorders for SNRK-AS1 Gene

Relevant External Links for SNRK-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNRK-AS1

No disorders were found for SNRK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNRK-AS1 Gene

Publications for SNRK-AS1 Gene

No publications were found for SNRK-AS1 Gene.

Products for SNRK-AS1 Gene

Sources for SNRK-AS1 Gene

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