Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD99 Gene

Subcategory (RNA class) for SNORD99 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD99 Gene

  • Small Nucleolar RNA, C/D Box 99 2 3 5
  • HBII-420 3

External Ids for SNORD99 Gene

ORGUL Members for SNORD99 Gene

Previous GeneCards Identifiers for SNORD99 Gene

  • GC01U901247
  • GC01M028782
  • GC01M028783
  • GC01M028785
  • GC01M028906
  • GC01M027158
  • GC01M028914
  • GC01M028927
  • GC01M028937
  • GC01M028580

Summaries for SNORD99 Gene

GeneCards Summary for SNORD99 Gene

SNORD99 (Small Nucleolar RNA, C/D Box 99) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD99 Gene

Genomics for SNORD99 Gene

Regulatory Elements for SNORD99 Gene

Enhancers for SNORD99 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F028551 0.4 ENCODE 12.8 +25.7 25652 2.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 CBX5 PRDX3P2 SNORA61 SNORD99 SNORA73B RCC1 SNHG3 PHACTR4 RAB42 GMEB1 ENSG00000237934
GH01F028601 1.2 Ensembl ENCODE 12.2 -23.2 -23175 1.4 SIN3A FEZF1 ZNF766 FOS JUNB TBX21 ZNF518A SMARCA4 MYNN GLIS1 PHACTR4 SNORD99 SNORA61 TRNAU1AP PRDX3P2 SNORA73B RCC1 SNHG3 TMEM200B GMEB1
GH01F028602 0.2 ENCODE 12.2 -24.1 -24139 0.3 HDGF ARNT ARID4B ZBTB40 ZNF2 RAD21 DEK THAP11 ZNF362 ZNF654 PHACTR4 SNORD99 SNORA61 PRDX3P2 SNORA73B RCC1 SNHG3 TMEM200B GMEB1 AHDC1
GH01F028471 0.2 ENCODE 11.1 +107.2 107161 0.5 CTCF HDGF JUN BACH1 RAD21 ZNF316 NCOR1 SMC3 NFE2 MAFK PHACTR4 TRNAU1AP RCC1 SNHG3 SNORA73B PRDX3P2 SNORA61 SNORD99 RNU6ATAC27P ENSG00000229820
GH01F028487 0.6 FANTOM5 11.1 +91.3 91264 0.4 BCOR ZMYM3 ATF2 PHACTR4 SNORA73B PRDX3P2 RAB42 SNORA61 SNORD99 TRNAU1AP EYA3 RNU6ATAC27P RCC1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD99 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD99 Gene

Chromosome:
1
Start:
28,578,743 bp from pter
End:
28,578,822 bp from pter
Size:
80 bases
Orientation:
Minus strand

Genomic View for SNORD99 Gene

Genes around SNORD99 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD99 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD99 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD99 Gene

Proteins for SNORD99 Gene

Post-translational modifications for SNORD99 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD99 Gene

Domains & Families for SNORD99 Gene

Gene Families for SNORD99 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD99: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD99 Gene

Function for SNORD99 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD99 Gene

Localization for SNORD99 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD99 Gene

Pathways & Interactions for SNORD99 Gene

SuperPathways for SNORD99 Gene

No Data Available

Interacting Proteins for SNORD99 Gene

Gene Ontology (GO) - Biological Process for SNORD99 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD99 Gene

Transcripts for SNORD99 Gene

mRNA/cDNA for SNORD99 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD99 Gene

No ASD Table

Relevant External Links for SNORD99 Gene

GeneLoc Exon Structure for
SNORD99
ECgene alternative splicing isoforms for
SNORD99

Expression for SNORD99 Gene

mRNA expression in normal human tissues for SNORD99 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD99 Gene:

SNORD99
genes like me logo Genes that share expression patterns with SNORD99: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD99 Gene

Orthologs for SNORD99 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD99 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD99 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD99 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD99 35
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord99 35
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD99 35
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD99 35
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD99 35
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD99 35
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD99 35
  • 71 (a)
OneToOne
Species where no ortholog for SNORD99 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD99 Gene

ENSEMBL:
Gene Tree for SNORD99 (if available)
TreeFam:
Gene Tree for SNORD99 (if available)

Paralogs for SNORD99 Gene

No data available for Paralogs for SNORD99 Gene

Variants for SNORD99 Gene

Sequence variations from dbSNP and Humsavar for SNORD99 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111977166 -- 28,579,770(+) CCTGT(C/T)TGAAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs116513381 -- 28,579,436(+) GTTCT(A/G)TTAGG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1342086 -- 28,579,054(-) GTGCC(C/G)TTAGC intron-variant, upstream-variant-2KB
rs138294743 -- 28,579,259(+) GGTGC(A/G)TGCTT intron-variant, upstream-variant-2KB
rs138922227 -- 28,579,805(+) TTACA(A/G)CATTT intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD99 Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781

Relevant External Links for SNORD99 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD99

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD99 Gene

Disorders for SNORD99 Gene

Relevant External Links for SNORD99

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD99

No disorders were found for SNORD99 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD99 Gene

Publications for SNORD99 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD99 Gene

Sources for SNORD99 Gene

Content
Loading form....