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Aliases for SNORD98 Gene

Subcategory (RNA class) for SNORD98 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD98 Gene

  • Small Nucleolar RNA, C/D Box 98 2 3 5
  • HBII-419 3

External Ids for SNORD98 Gene

ORGUL Members for SNORD98 Gene

Previous GeneCards Identifiers for SNORD98 Gene

  • GC10U900647
  • GC10P070185
  • GC10P070514
  • GC10P064516

Summaries for SNORD98 Gene

GeneCards Summary for SNORD98 Gene

SNORD98 (Small Nucleolar RNA, C/D Box 98) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD98 Gene

Genomics for SNORD98 Gene

Regulatory Elements for SNORD98 Gene

Enhancers for SNORD98 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F068923 0.6 FANTOM5 10.9 +168.1 168050 0.2 MTA2 ZBTB2 ZFHX2 IKZF1 TARDBP NBN ZNF584 ZFX KLF13 STOX1 SNORD98 CCAR1 MIR1254-1 RNU6-571P GC10M068913 DDX21
GH10F068553 0.2 ENCODE 10 -201.8 -201814 0.2 IKZF1 SLC25A16 CCAR1 DDX50 MIR1254-1 SNORD98 TET1 TMEM14DP
GH10F068550 0.8 ENCODE 10 -204.2 -204214 0.2 ELF3 HDGF CTCF ZNF223 MAX CDC5L RAD21 ZNF121 ZFHX2 NCOR1 SLC25A16 CCAR1 DDX50 MIR1254-1 SNORD98 TET1 TMEM14DP
GH10F068348 0.2 ENCODE 9.6 -406.5 -406524 0.2 SMARCA5 SCRT1 CTCF ZNF654 CBX3 ZNF280D SIN3A MAX ZNF384 RAD21 HERC4 CCAR1 MIR1254-1 SNORD98 PBLD RUFY2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD98 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD98 Gene

Chromosome:
10
Start:
68,755,172 bp from pter
End:
68,755,238 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD98 Gene

Genes around SNORD98 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD98 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD98 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD98 Gene

Proteins for SNORD98 Gene

Post-translational modifications for SNORD98 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD98 Gene

Domains & Families for SNORD98 Gene

Gene Families for SNORD98 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD98: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD98 Gene

Function for SNORD98 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD98 Gene

Localization for SNORD98 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD98 Gene

Pathways & Interactions for SNORD98 Gene

SuperPathways for SNORD98 Gene

No Data Available

Interacting Proteins for SNORD98 Gene

Gene Ontology (GO) - Biological Process for SNORD98 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD98 Gene

Transcripts for SNORD98 Gene

mRNA/cDNA for SNORD98 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD98 Gene

No ASD Table

Relevant External Links for SNORD98 Gene

GeneLoc Exon Structure for
SNORD98
ECgene alternative splicing isoforms for
SNORD98

Expression for SNORD98 Gene

mRNA expression in normal human tissues for SNORD98 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD98 Gene:

SNORD98
genes like me logo Genes that share expression patterns with SNORD98: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD98 Gene

Orthologs for SNORD98 Gene

Evolution for SNORD98 Gene

ENSEMBL:
Gene Tree for SNORD98 (if available)
TreeFam:
Gene Tree for SNORD98 (if available)

No data available for Orthologs for SNORD98 Gene

Paralogs for SNORD98 Gene

No data available for Paralogs for SNORD98 Gene

Variants for SNORD98 Gene

Sequence variations from dbSNP and Humsavar for SNORD98 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs112057556 -- 68,753,594(+) AGTTA(C/T)TTCAA intron-variant, upstream-variant-2KB
rs113916300 -- 68,754,796(+) TCGAG(A/G)TGGAT nc-transcript-variant, upstream-variant-2KB, reference, missense
rs139761957 -- 68,753,602(+) CAAAG(C/T)GTCTT intron-variant, upstream-variant-2KB
rs140565825 -- 68,754,789(+) AAGAA(C/T)TTCGA nc-transcript-variant, upstream-variant-2KB, reference, missense
rs144364640 -- 68,753,819(+) TTAAG(G/T)CTATT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD98 Gene

Variant ID Type Subtype PubMed ID
esv2759764 CNV loss 17122850
nsv1047983 CNV gain 25217958
nsv1052569 CNV gain 25217958
nsv551435 CNV loss 21841781

Relevant External Links for SNORD98 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD98

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD98 Gene

Disorders for SNORD98 Gene

Relevant External Links for SNORD98

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD98

No disorders were found for SNORD98 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD98 Gene

Publications for SNORD98 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD98 Gene

Sources for SNORD98 Gene

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