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Aliases for SNORD97 Gene

Subcategory (RNA class) for SNORD97 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD97 Gene

  • Small Nucleolar RNA, C/D Box 97 2 3 5
  • U97 3

External Ids for SNORD97 Gene

ORGUL Members for SNORD97 Gene

Previous GeneCards Identifiers for SNORD97 Gene

  • GC11U900717
  • GC11M010823
  • GC11M010510
  • GC11M010802
  • GC11M010804
  • GC11M010806
  • GC11M010808
  • GC11M010810
  • GC11M010817

Summaries for SNORD97 Gene

GeneCards Summary for SNORD97 Gene

SNORD97 (Small Nucleolar RNA, C/D Box 97) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD97 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD97 Gene

Genomics for SNORD97 Gene

Regulatory Elements for SNORD97 Gene

Enhancers for SNORD97 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H010897 2 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -99.0 -98977 5 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF2 ZNF766 FOS DEK REST ZBED5-AS1 ZBED5 CTR9 EIF4G2 ENSG00000255125 AMPD3 SNORD97 ENSG00000250041 RNF141 LOC105376550
GH11H010855 1.4 ENCODE dbSUPER 9.8 -56.6 -56585 4 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ZBED5-AS1 LOC101928053 CTR9 EIF4G2 SNORD97 ZBED5 LOC105376547
GH11H010878 1.2 Ensembl ENCODE dbSUPER 10.3 -77.1 -77130 0 ELF3 CTCF SMARCC1 ETV1 TRIM22 ELF1 REST RAD21 CC2D1A ETV4 ZBED5-AS1 EIF4G2 SNORD97 ZBED5 ENSG00000250041
GH11H010777 1 Ensembl ENCODE 11.1 +23.2 23241 1 SOX13 FOXA2 MAX CEBPG RARA YY1 POLR2A HNF4G FOS RCOR1 SNORD97 EIF4G2 CTR9 ZBED5-AS1 ZBED5 ENSG00000255125
GH11H010822 0.9 Ensembl ENCODE 10.7 -21.6 -21634 2 BRD4 PKNOX1 IRF2 RFX1 HDAC2 TAL1 NR2F1 CUX1 RFX5 ZBED5-AS1 ZBED5 ENSG00000255125 SNORD97 LOC101928053 PIR40421 GC11M010630
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD97 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD97 Gene

Chromosome:
11
Start:
10,801,467 bp from pter
End:
10,801,608 bp from pter
Size:
142 bases
Orientation:
Minus strand

Genomic View for SNORD97 Gene

Genes around SNORD97 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD97 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD97 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD97 Gene

Proteins for SNORD97 Gene

Post-translational modifications for SNORD97 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD97 Gene

Domains & Families for SNORD97 Gene

Gene Families for SNORD97 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD97: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD97 Gene

Function for SNORD97 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD97
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD97 Gene

Localization for SNORD97 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD97 Gene

Pathways & Interactions for SNORD97 Gene

SuperPathways for SNORD97 Gene

No Data Available

Interacting Proteins for SNORD97 Gene

Gene Ontology (GO) - Biological Process for SNORD97 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD97 Gene

Drugs & Compounds for SNORD97 Gene

No Compound Related Data Available

Transcripts for SNORD97 Gene

mRNA/cDNA for SNORD97 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD97
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD97 Gene

No ASD Table

Relevant External Links for SNORD97 Gene

GeneLoc Exon Structure for
SNORD97
ECgene alternative splicing isoforms for
SNORD97

Expression for SNORD97 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD97 Gene:

SNORD97

SOURCE GeneReport for Unigene cluster for SNORD97 Gene:

Hs.723086
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD97 Gene

Orthologs for SNORD97 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD97 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD97 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD97 34
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD97 34
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD97 34
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23262 34
  • 66 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD97 34
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD97 34
  • 54 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD97 34
  • 48 (a)
OneToOne
Species where no ortholog for SNORD97 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD97 Gene

ENSEMBL:
Gene Tree for SNORD97 (if available)
TreeFam:
Gene Tree for SNORD97 (if available)

Paralogs for SNORD97 Gene

No data available for Paralogs for SNORD97 Gene

Variants for SNORD97 Gene

Sequence variations from dbSNP and Humsavar for SNORD97 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000521772 -- 10,800,983(+) GTTTG(A/G)GTGCG downstream-variant-500B, reference, synonymous-codon
rs1001323268 -- 10,801,277(+) TACAG(C/T)AGTAA intron-variant, downstream-variant-500B
rs1002670891 -- 10,802,535(+) TAAAC(C/T)ATAAT intron-variant, upstream-variant-2KB
rs1002846545 -- 10,803,240(+) TGGCA(A/G)TTCCT upstream-variant-2KB, reference, synonymous-codon
rs1003000028 -- 10,802,722(+) ATTAG(C/T)GGGGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD97 Gene

Variant ID Type Subtype PubMed ID
nsv483000 CNV loss 15286789

Relevant External Links for SNORD97 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD97

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD97 Gene

Disorders for SNORD97 Gene

Relevant External Links for SNORD97

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD97

No disorders were found for SNORD97 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD97 Gene

Publications for SNORD97 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD97 Gene

Sources for SNORD97 Gene

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