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Aliases for SNORD96A Gene

Subcategory (RNA class) for SNORD96A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD96A Gene

  • Small Nucleolar RNA, C/D Box 96A 2 3
  • C/D Box SnoRNA U96a 3
  • U96A 3

External Ids for SNORD96A Gene

ORGUL Members for SNORD96A Gene

Previous GeneCards Identifiers for SNORD96A Gene

  • GC05M180604
  • GC05M180668
  • GC05M175395

Summaries for SNORD96A Gene

GeneCards Summary for SNORD96A Gene

SNORD96A (Small Nucleolar RNA, C/D Box 96A) is an RNA Gene, and is affiliated with the snoRNA class. Among its related pathways are Androgen receptor signaling pathway and TNF-alpha/NF-kB Signaling Pathway.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD96A Gene

Genomics for SNORD96A Gene

Regulatory Elements for SNORD96A Gene

Genomic Location for SNORD96A Gene

Start:
181,241,814 bp from pter
End:
181,241,892 bp from pter
Size:
79 bases
Orientation:
Minus strand

Genomic View for SNORD96A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD96A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD96A Gene

Proteins for SNORD96A Gene

Post-translational modifications for SNORD96A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD96A Gene

Domains for SNORD96A Gene

Gene Families for SNORD96A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD96A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD96A Gene

Function for SNORD96A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD96A Gene

Localization for SNORD96A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD96A Gene

Pathways for SNORD96A Gene

genes like me logo Genes that share pathways with SNORD96A: view

Pathways by source for SNORD96A Gene

Interacting Proteins for SNORD96A Gene

Gene Ontology (GO) - Biological Process for SNORD96A Gene

None

Transcripts for SNORD96A Gene

mRNA/cDNA for SNORD96A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD96A Gene

No ASD Table

Relevant External Links for SNORD96A Gene

GeneLoc Exon Structure for
SNORD96A
ECgene alternative splicing isoforms for
SNORD96A

Expression for SNORD96A Gene

mRNA expression in normal human tissues for SNORD96A Gene

genes like me logo Genes that share expressions with SNORD96A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD96A Gene

Orthologs for SNORD96A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD96A Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord96a 16
Snord96a 36
  • 83 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD96 36
  • 95 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD96 36
  • 90 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD96 36
  • 76 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORD96 36
  • 99 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD96 36
  • 68 (a)
OneToMany
Species with no ortholog for SNORD96A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD96A Gene

ENSEMBL:
Gene Tree for SNORD96A (if available)
TreeFam:
Gene Tree for SNORD96A (if available)

Paralogs for SNORD96A Gene

No data available for Paralogs for SNORD96A Gene

Variants for SNORD96A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD96A Gene

Variant ID Type Subtype PubMed ID
nsv428133 CNV Gain 18775914
nsv883305 CNV Gain 21882294
nsv830567 CNV Loss 17160897
nsv517697 CNV Loss 19592680
dgv6409n71 CNV Loss 21882294
nsv462591 CNV Loss 19166990

Relevant External Links for SNORD96A Gene

HapMap Linkage Disequilibrium report
SNORD96A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD96A Gene

Disorders for SNORD96A Gene

No disorders were found for SNORD96A Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD96A Gene

Publications for SNORD96A Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD96A Gene

Sources for SNORD96A Gene

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