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Aliases for SNORD96A Gene

Subcategory (RNA class) for SNORD96A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD96A Gene

  • Small Nucleolar RNA, C/D Box 96A 2 3 5
  • C/D Box SnoRNA U96a 3
  • U96A 3

External Ids for SNORD96A Gene

ORGUL Members for SNORD96A Gene

Previous GeneCards Identifiers for SNORD96A Gene

  • GC05M180604
  • GC05M180668
  • GC05M175395

Summaries for SNORD96A Gene

GeneCards Summary for SNORD96A Gene

SNORD96A (Small Nucleolar RNA, C/D Box 96A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD96A Gene

Genomics for SNORD96A Gene

Regulatory Elements for SNORD96A Gene

Enhancers for SNORD96A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F181240 0.9 ENCODE 20.3 -3.3 -3307 9.0 CREB3L1 DMAP1 YBX1 YY1 ZNF143 ZNF548 ZNF263 MCM3 SP3 ZNF610 ENSG00000233937 ZFP62 TRIM52-AS1 RACK1 TRIM52 SNORD96A CNOT6 GFPT2 GC05M181244 GC05M181247
GH05F181215 0.6 Ensembl ENCODE 19.9 +24.2 24158 3.7 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ENSG00000233937 TRIM52-AS1 ZFP62 RACK1 SNORD96A TRIM7 TRIM52 ENSG00000248367 CNOT6 TRV-AAC1-4
GH05F181167 0.9 Ensembl ENCODE 19.7 +72.6 72624 3.1 HDGF ARNT SIN3A FEZF1 ZNF2 ZNF263 SP3 SP5 REST ZFP41 ENSG00000233937 SNORD96A RACK1 ZFP62 TRIM52 ENSG00000248514 CNOT6 ENSG00000248367 TRL-AAG7-1 TRV-AAC1-3
GH05F181221 0.4 ENCODE 11.6 +18.6 18641 4.4 CREB3L1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 ENSG00000233937 RACK1 TRIM52-AS1 OR2V2 ENSG00000250765 ZFP62 LOC100128762 LOC646227 LOC100419853 LOC100420514
GH05F181202 0.4 ENCODE 11.6 +36.2 36182 5.6 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF143 FOS TRIM7 RACK1 ENSG00000233937 TRIM52 ENSG00000248514 ZFP62 CNOT6 SNORD96A TRIM52-AS1 MAPK9
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD96A on UCSC Golden Path with GeneCards custom track

Promoters for SNORD96A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001877235 -1808 2601 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YBX1 ZNF2

Genomic Location for SNORD96A Gene

Chromosome:
5
Start:
181,241,814 bp from pter
End:
181,241,892 bp from pter
Size:
79 bases
Orientation:
Minus strand

Genomic View for SNORD96A Gene

Genes around SNORD96A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD96A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD96A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD96A Gene

Proteins for SNORD96A Gene

Post-translational modifications for SNORD96A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD96A Gene

Domains & Families for SNORD96A Gene

Gene Families for SNORD96A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD96A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD96A Gene

Function for SNORD96A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD96A Gene

Localization for SNORD96A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD96A Gene

Pathways & Interactions for SNORD96A Gene

SuperPathways for SNORD96A Gene

No Data Available

Interacting Proteins for SNORD96A Gene

Gene Ontology (GO) - Biological Process for SNORD96A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD96A Gene

Transcripts for SNORD96A Gene

mRNA/cDNA for SNORD96A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD96A Gene

No ASD Table

Relevant External Links for SNORD96A Gene

GeneLoc Exon Structure for
SNORD96A
ECgene alternative splicing isoforms for
SNORD96A

Expression for SNORD96A Gene

mRNA expression in normal human tissues for SNORD96A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD96A Gene:

SNORD96A
genes like me logo Genes that share expression patterns with SNORD96A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD96A Gene

Orthologs for SNORD96A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD96A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD96 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD96 35
  • 95 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD96 35
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snord96a 35
  • 83 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD96 35
  • 76 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD96 35
  • 68 (a)
OneToMany
Species where no ortholog for SNORD96A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD96A Gene

ENSEMBL:
Gene Tree for SNORD96A (if available)
TreeFam:
Gene Tree for SNORD96A (if available)

Paralogs for SNORD96A Gene

No data available for Paralogs for SNORD96A Gene

Variants for SNORD96A Gene

Sequence variations from dbSNP and Humsavar for SNORD96A Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1059315 -- 181,243,851(-) CTAAG(C/G)CATCC upstream-variant-2KB, utr-variant-5-prime
rs111326428 -- 181,243,160(+) GTGTA(A/G)CAGCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111709706 -- 181,241,489(+) CACTT(A/T)ACCTG intron-variant, downstream-variant-500B
rs111814241 -- 181,242,533(+) AAAAC(A/G)CACGT intron-variant, upstream-variant-2KB
rs112143249 -- 181,241,640(+) TGCCC(C/G)TGAGA downstream-variant-500B, splice-acceptor-variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD96A Gene

Variant ID Type Subtype PubMed ID
dgv1155e214 CNV gain 21293372
dgv1156e214 CNV loss 21293372
nsv1028730 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781
nsv830567 CNV loss 17160897

Relevant External Links for SNORD96A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD96A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD96A Gene

Disorders for SNORD96A Gene

Relevant External Links for SNORD96A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD96A

No disorders were found for SNORD96A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD96A Gene

Publications for SNORD96A Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD96A Gene

Sources for SNORD96A Gene

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