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Aliases for SNORD94 Gene

Subcategory (RNA class) for SNORD94 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD94 Gene

  • Small Nucleolar RNA, C/D Box 94 2 3 5
  • U94 3

External Ids for SNORD94 Gene

ORGUL Members for SNORD94 Gene

Previous GeneCards Identifiers for SNORD94 Gene

  • GC02U900837
  • GC02P086217
  • GC02P086362

Summaries for SNORD94 Gene

GeneCards Summary for SNORD94 Gene

SNORD94 (Small Nucleolar RNA, C/D Box 94) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD94 Gene

Genomics for SNORD94 Gene

Regulatory Elements for SNORD94 Gene

Enhancers for SNORD94 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F086371 0.9 Ensembl 78.7 +236.1 236131 1.2 ZFP64 ZNF138 GATA2 FOS ZNF202 ZNF680 ZNF654 ZBTB11 REST ZNF623 SNORD94 LOC102724642 LOC105374845 ENSG00000231259 LOC100420889 CHMP3 MAT2A C2orf68 ENSG00000202537 REEP1
GH02F086440 1.2 ENCODE 44.3 +306.2 306156 3.6 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 SNORD94 LOC102724642 C2orf68 LOC100420889 ENSG00000231259 LOC105374845 CHMP3 MAT2A MRPL35 GC02M086437
GH02F086694 1.3 FANTOM5 ENCODE 30.3 +559.5 559526 1.5 ELF3 CBX3 INSM2 GLI4 DNMT3B RARA CHAMP1 ZNF155 ZNF366 SCRT2 SNORD94 LOC102724642 RNF103-CHMP3 RNF103 CHMP3 RNU6-640P RMND5A CD8A ENSG00000231259 GC02P086686
GH02F085236 1.3 FANTOM5 Ensembl ENCODE 29.7 -898.0 -897977 1.9 ZFP64 TEAD4 MAX ZNF266 ZNF140 ZBTB40 ZNF101 ZNF664 ZFHX2 POLR2A SNORD94 C2orf68 RNU6-674P TCF7L1 LOC100996506 MAT2A SH2D6 LOC105374839 PIR49587
GH02F086193 1.2 ENCODE 25 +59.6 59578 3.9 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 IMMT SNORD94 LOC102724642 ENSG00000231259 LOC100420889 LOC100996506 TMEM150A LOC105374845 C2orf68 ATOH8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD94 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD94 Gene

Chromosome:
2
Start:
86,135,870 bp from pter
End:
86,136,006 bp from pter
Size:
137 bases
Orientation:
Plus strand

Genomic View for SNORD94 Gene

Genes around SNORD94 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD94 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD94 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD94 Gene

Proteins for SNORD94 Gene

Post-translational modifications for SNORD94 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD94 Gene

Domains & Families for SNORD94 Gene

Gene Families for SNORD94 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD94: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD94 Gene

Function for SNORD94 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD94 Gene

Localization for SNORD94 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD94 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORD94 Gene

Pathways & Interactions for SNORD94 Gene

SuperPathways for SNORD94 Gene

No Data Available

Interacting Proteins for SNORD94 Gene

Gene Ontology (GO) - Biological Process for SNORD94 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD94 Gene

Transcripts for SNORD94 Gene

mRNA/cDNA for SNORD94 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD94 Gene

No ASD Table

Relevant External Links for SNORD94 Gene

GeneLoc Exon Structure for
SNORD94
ECgene alternative splicing isoforms for
SNORD94

Expression for SNORD94 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD94 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD94 Gene:

SNORD94

SOURCE GeneReport for Unigene cluster for SNORD94 Gene:

Hs.723087
genes like me logo Genes that share expression patterns with SNORD94: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD94 Gene

Orthologs for SNORD94 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD94 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD94 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD94 35
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD94 35
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22486 35
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD94 35
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD94 35 35 35 35
  • 69 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD94 35
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD94 35
  • 68 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD94 35
  • 64 (a)
OneToOne
Species where no ortholog for SNORD94 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD94 Gene

ENSEMBL:
Gene Tree for SNORD94 (if available)
TreeFam:
Gene Tree for SNORD94 (if available)

Paralogs for SNORD94 Gene

No data available for Paralogs for SNORD94 Gene

Variants for SNORD94 Gene

Sequence variations from dbSNP and Humsavar for SNORD94 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10171798 -- 86,135,197(+) ACGCT(A/G)AGAAT intron-variant, upstream-variant-2KB
rs10171903 -- 86,135,281(+) TCAAA(A/G)AAATA intron-variant, upstream-variant-2KB
rs112400746 -- 86,134,218(+) AAAAA(A/G)TAGGT intron-variant, upstream-variant-2KB
rs112717516 -- 86,136,489(+) CTAAT(A/T)GTATT intron-variant, downstream-variant-500B
rs115208284 -- 86,134,109(+) GCAAG(A/G)CCCAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD94 Gene

Variant ID Type Subtype PubMed ID
nsv458563 CNV gain 19166990
esv3591540 CNV gain 21293372
esv2751903 CNV gain 17911159
dgv712e214 CNV gain 21293372
dgv6946n54 CNV gain 21841781
dgv3885n100 CNV gain 25217958

Relevant External Links for SNORD94 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD94

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD94 Gene

Disorders for SNORD94 Gene

Relevant External Links for SNORD94

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD94

No disorders were found for SNORD94 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD94 Gene

Publications for SNORD94 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD94 Gene

Sources for SNORD94 Gene

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