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Aliases for SNORD91A Gene

Subcategory (RNA class) for SNORD91A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD91A Gene

  • Small Nucleolar RNA, C/D Box 91A 2 3 5
  • HBII-296a 3

External Ids for SNORD91A Gene

Previous GeneCards Identifiers for SNORD91A Gene

  • GC17U900622
  • GC17M002180
  • GC17M002233

Summaries for SNORD91A Gene

GeneCards Summary for SNORD91A Gene

SNORD91A (Small Nucleolar RNA, C/D Box 91A) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORD91A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD91A Gene

Genomics for SNORD91A Gene

GeneHancer (GH) Regulatory Elements for SNORD91A Gene

Promoters and enhancers for SNORD91A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I002053 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 +266.9 266932 20.4 HDGF PKNOX1 FOXA2 SMAD1 ARID4B SIN3A ZNF2 IRF4 YY1 ZNF213 HIC1 GC17M002060 DPH1 PRPF8 SMYD4 SRR METTL16 LOC101927839 HNRNPA1P16 ENSG00000236457
GH17I002170 Enhancer 2.5 VISTA UCNEbase FANTOM5 Ensembl ENCODE dbSUPER 10.7 +152.9 152871 13.4 PKNOX1 FOXA2 ARID4B FEZF1 ZNF48 ETS1 YY1 ZNF121 ZNF213 KLF7 GC17P002179 SRR ENSG00000236838 HIC1 ENSG00000236457 LOC101927839 OVCA2 SNORD91A SNORD91B SMG6
GH17I002261 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.2 +65.3 65280 7.3 PKNOX1 SMAD1 FEZF1 ZNF2 ZNF207 ATF7 FOS RUNX3 ZNF214 ZNF491 SMG6 GC17P002267 SRR HNRNPA1P16 ENSG00000263050 METTL16 LOC105371592 DPH1 ENSG00000263345 TSR1
GH17I002259 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +70.8 70771 2.9 PKNOX1 SMAD1 BATF KLF5 IRF4 ZNF207 ATF7 ETV6 IKZF2 RUNX3 SRR SMG6 HIC1 OVCA2 ENSG00000236457 ENSG00000236838 SNORD91B SNORD91A SMYD4 METTL16
GH17I002357 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.3 -28.9 -28886 2.8 PKNOX1 INSM2 KLF17 MZF1 ZNF76 ZNF335 GLIS2 ZNF366 SCRT2 FOS GC17M002359 SGSM2 MNT TSR1 SNORD91A SNORD91B SMG6 SRR HIC1 OVCA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD91A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD91A gene promoter:

Genomic Locations for SNORD91A Gene

Genomic Locations for SNORD91A Gene
chr17:2,330,180-2,330,370
(GRCh38/hg38)
Size:
191 bases
Orientation:
Minus strand
chr17:2,233,570-2,233,664
(GRCh37/hg19)

Genomic View for SNORD91A Gene

Genes around SNORD91A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD91A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD91A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD91A Gene

Proteins for SNORD91A Gene

Post-translational modifications for SNORD91A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD91A Gene

Domains & Families for SNORD91A Gene

Gene Families for SNORD91A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD91A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD91A Gene

Function for SNORD91A Gene

Phenotypes From GWAS Catalog for SNORD91A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD91A Gene

Localization for SNORD91A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD91A Gene

Pathways & Interactions for SNORD91A Gene

SuperPathways for SNORD91A Gene

No Data Available

Interacting Proteins for SNORD91A Gene

Gene Ontology (GO) - Biological Process for SNORD91A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD91A Gene

Drugs & Compounds for SNORD91A Gene

No Compound Related Data Available

Transcripts for SNORD91A Gene

mRNA/cDNA for SNORD91A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD91A Gene

No ASD Table

Relevant External Links for SNORD91A Gene

GeneLoc Exon Structure for
SNORD91A
ECgene alternative splicing isoforms for
SNORD91A

Expression for SNORD91A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD91A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD91A Gene:

SNORD91A
genes like me logo Genes that share expression patterns with SNORD91A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD91A Gene

Orthologs for SNORD91A Gene

Evolution for SNORD91A Gene

ENSEMBL:
Gene Tree for SNORD91A (if available)
TreeFam:
Gene Tree for SNORD91A (if available)

No data available for Orthologs for SNORD91A Gene

Paralogs for SNORD91A Gene

No data available for Paralogs for SNORD91A Gene

Variants for SNORD91A Gene

Sequence variations from dbSNP and Humsavar for SNORD91A Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000724567 -- 2,331,763(-) T/C upstream_transcript_variant
rs1002427752 -- 2,330,212(-) C/T downstream_transcript_variant
rs1002939770 -- 2,331,968(-) G/A upstream_transcript_variant
rs1003330514 -- 2,330,779(-) C/A upstream_transcript_variant
rs1008182840 -- 2,329,830(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD91A Gene

Variant ID Type Subtype PubMed ID
nsv1060897 CNV loss 25217958
nsv1067416 CNV loss 25217958
nsv469765 CNV loss 16826518
nsv574224 CNV gain 21841781
nsv833336 CNV loss 17160897

Additional Variant Information for SNORD91A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD91A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD91A Gene

Disorders for SNORD91A Gene

Additional Disease Information for SNORD91A

No disorders were found for SNORD91A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD91A Gene

Publications for SNORD91A Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD91A Gene

Sources for SNORD91A Gene

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