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Aliases for SNORD90 Gene

Subcategory (RNA class) for SNORD90 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD90 Gene

  • Small Nucleolar RNA, C/D Box 90 2 3 5
  • HBII-295 3

External Ids for SNORD90 Gene

ORGUL Members for SNORD90 Gene

Previous GeneCards Identifiers for SNORD90 Gene

  • GC09U900727
  • GC09M124682
  • GC09M125642
  • GC09M095258

Summaries for SNORD90 Gene

GeneCards Summary for SNORD90 Gene

SNORD90 (Small Nucleolar RNA, C/D Box 90) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD90 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD90 Gene

Genomics for SNORD90 Gene

GeneHancer (GH) Regulatory Elements for SNORD90 Gene

Promoters and enhancers for SNORD90 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I122902 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.4 -23.9 -23932 3.9 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 YY1 GC09P122904 RC3H2 ZBTB26 SNORD90 MRRF RABGAP1 MIR600HG PIR42233
GH09I122819 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.1 +59.4 59427 3.6 HDAC1 PKNOX1 FOXA2 TAF9B TCF12 ZNF766 GATA2 ATF7 CREM CEBPB OR1K1 OR5C1 SNORD90 GC09M122816 PDCL
GH09I122900 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -21.0 -20954 1.8 ZBTB33 ELF1 MLLT1 ZBTB40 SNORD90 GC09P122904 RC3H2 PIR42233
GH09I122815 Enhancer 1 Ensembl ENCODE dbSUPER 10.2 +64.0 63972 1.8 BCOR ZMYM3 ZIC2 NR2F2 JUND POLR2A ADNP ZNF600 KDM1A MYC GC09M122816 OR5C1 SNORD90 PDCL OR1K1
GH09I123002 Enhancer 0.9 Ensembl ENCODE 10.9 -123.1 -123142 1.4 TEAD4 TAL1 BACH1 CC2D1A TCF12 ZNF316 NCOR1 VEZF1 NFE2 PRDM10 ZBTB6 SNORD90 RABGAP1 GC09M123030 RNY1P15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD90 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD90 gene promoter:

Genomic Locations for SNORD90 Gene

Genomic Locations for SNORD90 Gene
chr9:122,880,213-122,880,323
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand
chr9:125,642,492-125,642,602
(GRCh37/hg19)

Genomic View for SNORD90 Gene

Genes around SNORD90 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD90 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD90 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD90 Gene

Proteins for SNORD90 Gene

Post-translational modifications for SNORD90 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD90 Gene

Domains & Families for SNORD90 Gene

Gene Families for SNORD90 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD90: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD90 Gene

Function for SNORD90 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD90 Gene

Localization for SNORD90 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD90 Gene

Pathways & Interactions for SNORD90 Gene

SuperPathways for SNORD90 Gene

No Data Available

Interacting Proteins for SNORD90 Gene

Gene Ontology (GO) - Biological Process for SNORD90 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD90 Gene

Drugs & Compounds for SNORD90 Gene

No Compound Related Data Available

Transcripts for SNORD90 Gene

mRNA/cDNA for SNORD90 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD90 Gene

No ASD Table

Relevant External Links for SNORD90 Gene

GeneLoc Exon Structure for
SNORD90
ECgene alternative splicing isoforms for
SNORD90

Expression for SNORD90 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD90 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD90 Gene:

SNORD90

SOURCE GeneReport for Unigene cluster for SNORD90 Gene:

Hs.693253
genes like me logo Genes that share expression patterns with SNORD90: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD90 Gene

Orthologs for SNORD90 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD90 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD90 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD90 34
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD90 34
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord90 34
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD90 34
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD90 34
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD90 34
  • 67 (a)
OneToOne
Species where no ortholog for SNORD90 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD90 Gene

ENSEMBL:
Gene Tree for SNORD90 (if available)
TreeFam:
Gene Tree for SNORD90 (if available)

Paralogs for SNORD90 Gene

No data available for Paralogs for SNORD90 Gene

Variants for SNORD90 Gene

Sequence variations from dbSNP and Humsavar for SNORD90 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000097789 -- 122,882,231(-) T/G upstream_transcript_variant
rs1001399764 -- 122,881,604(-) T/C upstream_transcript_variant
rs1001768877 -- 122,881,807(-) A/G upstream_transcript_variant
rs1003334459 -- 122,881,436(-) G/A upstream_transcript_variant
rs1006248703 -- 122,881,137(-) A/T upstream_transcript_variant

Additional Variant Information for SNORD90 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD90

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD90 Gene

Disorders for SNORD90 Gene

Additional Disease Information for SNORD90

No disorders were found for SNORD90 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD90 Gene

Publications for SNORD90 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD90 Gene

Sources for SNORD90 Gene

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