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Aliases for SNORD9 Gene

Subcategory (RNA class) for SNORD9 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD9 Gene

  • Small Nucleolar RNA, C/D Box 9 2 3
  • MgU6-53B 3

External Ids for SNORD9 Gene

ORGUL Members for SNORD9 Gene

Summaries for SNORD9 Gene

GeneCards Summary for SNORD9 Gene

SNORD9 (Small Nucleolar RNA, C/D Box 9) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD9 Gene

Genomics for SNORD9 Gene

Genomic Location for SNORD9 Gene

Start:
21,392,150 bp from pter
End:
21,392,253 bp from pter
Size:
104 bases
Orientation:
Minus strand

Genomic View for SNORD9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD9 Gene

Regulatory Elements for SNORD9 Gene

Proteins for SNORD9 Gene

Post-translational modifications for SNORD9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD9 Gene

Domains for SNORD9 Gene

Gene Families for SNORD9 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD9: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD9 Gene

Function for SNORD9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD9 Gene

Localization for SNORD9 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD9 Gene

Pathways for SNORD9 Gene

SuperPathways for SNORD9 Gene

No Data Available

Interacting Proteins for SNORD9 Gene

Gene Ontology (GO) - Biological Process for SNORD9 Gene

None

No data available for Pathways by source for SNORD9 Gene

Transcripts for SNORD9 Gene

mRNA/cDNA for SNORD9 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD9 Gene

Small nucleolar RNA, C/D box 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD9 Gene

No ASD Table

Relevant External Links for SNORD9 Gene

GeneLoc Exon Structure for
SNORD9
ECgene alternative splicing isoforms for
SNORD9

Expression for SNORD9 Gene

mRNA expression in normal human tissues for SNORD9 Gene

SOURCE GeneReport for Unigene cluster for SNORD9 Gene Hs.675950

genes like me logo Genes that share expressions with SNORD9: view

Orthologs for SNORD9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU6-53 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoU6-53 37
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoU6-53 37
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23734 37
  • 63 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia snoU6-53 37
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia snoU6-53 37
  • 62 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii snoU6-53 37
  • 63 (a)
ManyToMany
snoU6-53 37
  • 57 (a)
ManyToMany
snoU6-53 37
  • 54 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea snoU6-53 37
  • 58 (a)
ManyToMany
snoU6-53 37
  • 58 (a)
ManyToMany
Species with no ortholog for SNORD9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD9 Gene

ENSEMBL:
Gene Tree for SNORD9 (if available)
TreeFam:
Gene Tree for SNORD9 (if available)

Paralogs for SNORD9 Gene

No data available for Paralogs for SNORD9 Gene

Variants for SNORD9 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD9 Gene

Variant ID Type Subtype PubMed ID
nsv483070 CNV Gain 15286789

Relevant External Links for SNORD9 Gene

HapMap Linkage Disequilibrium report
SNORD9

No data available for Sequence variations from dbSNP and Humsavar for SNORD9 Gene

Disorders for SNORD9 Gene

No disorders were found for SNORD9 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD9 Gene

Publications for SNORD9 Gene

  1. Nucleolar factors direct the 2'-O-ribose methylation and pseudouridylation of U6 spliceosomal RNA. (PMID: 10490628) Ganot P. … Kiss T. (Mol. Cell. Biol. 1999) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for SNORD9 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD9
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD9
    • Block miRNA regulation of SNORD9 using miScript Target Protectors

    Sources for SNORD9 Gene

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