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SNORD89 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 89

GCID:
GC02M101272
GIFtS:
25
Genes Participants
UDN Logo

Aliases for SNORD89 Gene

Subcategory (RNA class) for SNORD89 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD89 Gene

  • Small Nucleolar RNA, C/D Box 89 2 3 5
  • HBII-289 3

External Ids for SNORD89 Gene

ORGUL Members for SNORD89 Gene

Previous GeneCards Identifiers for SNORD89 Gene

  • GC02U900834
  • GC02M101255
  • GC02M101889
  • GC02M095653

Summaries for SNORD89 Gene

GeneCards Summary for SNORD89 Gene

SNORD89 (Small Nucleolar RNA, C/D Box 89) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD89 Gene

Genomics for SNORD89 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNORD89 Gene

Enhancers for SNORD89 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G101305 1.8 FANTOM5 ENCODE dbSUPER 39.1 -35.6 -35590 7.2 HDGF HNRNPUL1 FOXA2 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SNORD89 RNF149 IL1R1 MAP4K4 RPL31 GC02M101274
GH02G101236 1.4 Ensembl ENCODE dbSUPER 40 +34.0 33953 4.3 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 PAF1 MIER2 PPARG KAT8 SNORD89 RNF149 CNOT11 TBC1D8-AS1
GH02G101250 1.6 Ensembl ENCODE dbSUPER 29.2 +20.0 20024 4.1 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 SNORD89 RNF149 TBC1D8 LOC105373511
GH02G101300 0.7 Ensembl dbSUPER 41.1 -27.8 -27752 0.8 TBX21 RBFOX2 SNORD89 RNF149 GC02M101274
GH02G101233 0.9 ENCODE 28.2 +38.6 38551 1.8 ELF3 CBX3 FOXA2 MLX DMAP1 THRB ZNF48 ZSCAN9 RARA TCF12 SNORD89 RNF149 CNOT11 TBC1D8-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD89 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the SNORD89 gene promoter:

Genomic Location for SNORD89 Gene

Chromosome:
2
Start:
101,272,936 bp from pter
End:
101,273,049 bp from pter
Size:
114 bases
Orientation:
Minus strand

Genomic View for SNORD89 Gene

Genes around SNORD89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD89 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD89 Gene

Proteins for SNORD89 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD89 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD89 Gene

Domains & Families for SNORD89 Gene

Gene Families for SNORD89 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD89: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD89 Gene

Function for SNORD89 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD89 Gene

Localization for SNORD89 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD89 Gene

Pathways & Interactions for SNORD89 Gene

SuperPathways for SNORD89 Gene

PathCards logo More details on SuperPathways for SNORD89
No Data Available

Interacting Proteins for SNORD89 Gene

Gene Ontology (GO) - Biological Process for SNORD89 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD89 Gene

Drugs & Compounds for SNORD89 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD89 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD89 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD89 Gene

Small nucleolar RNA, C/D box 89:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD89 Gene

No ASD Table

Relevant External Links for SNORD89 Gene

GeneLoc Exon Structure for
SNORD89
ECgene alternative splicing isoforms for
SNORD89

Expression for SNORD89 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD89 Gene

mRNA expression in normal human tissues for SNORD89 Gene
mRNA expression by GTEx for SNORD89 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD89 Gene

This gene is overexpressed in Whole Blood (x9.5).

NURSA nuclear receptor signaling pathways regulating expression of SNORD89 Gene:

SNORD89

SOURCE GeneReport for Unigene cluster for SNORD89 Gene:

Hs.656503
genes like me logo Genes that share expression patterns with SNORD89: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD89 Gene

Orthologs for SNORD89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD89 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD89 35
  • 100 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Snord89 35
  • 91 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD89 35
  • 89 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD89 35
  • 86 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD89 35
  • 84 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD89 35 35
  • 75 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves SNORD89 35
  • 82 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SNORD89 35
  • 73 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii SNORD89 35
  • 61 (a)
 OneToOne
Species where no ortholog for SNORD89 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD89 Gene

ENSEMBL:
Gene Tree for SNORD89 (if available)
TreeFam:
Gene Tree for SNORD89 (if available)

Paralogs for SNORD89 Gene

No data available for Paralogs for SNORD89 Gene

Variants for SNORD89 Gene

Sequence variations from dbSNP and Humsavar for SNORD89 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1002729147 -- 101,273,702(+) TCCTG(A/G)GCTCA intron-variant, upstream-variant-2KB
rs1003701737 -- 101,272,631(+) GTTTA(C/T)ACCAA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1004142389 -- 101,274,849(+) TGGCA(C/T)GATCT intron-variant, upstream-variant-2KB
rs1004328004 -- 101,274,465(+) CCTTT(C/T)TCTCC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1004924206 -- 101,273,037(+) TTGTC(A/G)TCATT intron-variant, nc-transcript-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNORD89 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV loss 18971310

Relevant External Links for SNORD89 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD89

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD89 Gene

Disorders for SNORD89 Gene

Relevant External Links for SNORD89

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD89

No disorders were found for SNORD89 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD89 Gene

Publications for SNORD89 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD89 Gene

Sources for SNORD89 Gene

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