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Aliases for SNORD89 Gene

Subcategory (RNA class) for SNORD89 Gene


Quality Score for this RNA gene is


Aliases for SNORD89 Gene

  • Small Nucleolar RNA, C/D Box 89 2 3
  • HBII-289 3

External Ids for SNORD89 Gene

ORGUL Members for SNORD89 Gene

Previous GeneCards Identifiers for SNORD89 Gene

  • GC02U900834
  • GC02M101255
  • GC02M101889
  • GC02M095653

Summaries for SNORD89 Gene

GeneCards Summary for SNORD89 Gene

SNORD89 (Small Nucleolar RNA, C/D Box 89) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD89 Gene

Genomics for SNORD89 Gene

Regulatory Elements for SNORD89 Gene

Genomic Location for SNORD89 Gene

101,272,936 bp from pter
101,273,049 bp from pter
114 bases
Minus strand

Genomic View for SNORD89 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD89 Gene

Proteins for SNORD89 Gene

Post-translational modifications for SNORD89 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD89 Gene

Domains for SNORD89 Gene

Gene Families for SNORD89 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD89: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD89 Gene

Function for SNORD89 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD89 Gene

Localization for SNORD89 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD89 Gene

Pathways for SNORD89 Gene

SuperPathways for SNORD89 Gene

No Data Available

Interacting Proteins for SNORD89 Gene

Gene Ontology (GO) - Biological Process for SNORD89 Gene


No data available for Pathways by source for SNORD89 Gene

Transcripts for SNORD89 Gene

mRNA/cDNA for SNORD89 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD89 Gene

Small nucleolar RNA, C/D box 89:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD89 Gene

No ASD Table

Relevant External Links for SNORD89 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD89 Gene

mRNA expression in normal human tissues for SNORD89 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SNORD89 Gene

This gene is overexpressed in Whole Blood (9.5).

SOURCE GeneReport for Unigene cluster for SNORD89 Gene Hs.656503

genes like me logo Genes that share expressions with SNORD89: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD89 Gene

Orthologs for SNORD89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD89 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Snord89 16
Snord89 36
  • 91 (a)
(Bos Taurus)
Mammalia SNORD89 36
  • 86 (a)
(Canis familiaris)
Mammalia SNORD89 36
  • 89 (a)
(Monodelphis domestica)
Mammalia SNORD89 36
  • 75 (a)
SNORD89 36
  • 84 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD89 36
  • 84 (a)
(Pan troglodytes)
Mammalia SNORD89 36
  • 100 (a)
(Gallus gallus)
Aves SNORD89 36
  • 82 (a)
(Anolis carolinensis)
Reptilia SNORD89 36
  • 73 (a)
(Danio rerio)
Actinopterygii SNORD89 36
  • 61 (a)
Species with no ortholog for SNORD89:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD89 Gene

Gene Tree for SNORD89 (if available)
Gene Tree for SNORD89 (if available)

Paralogs for SNORD89 Gene

No data available for Paralogs for SNORD89 Gene

Variants for SNORD89 Gene

Sequence variations from dbSNP and Humsavar for SNORD89 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs560369870 -- 101,272,444(+) AAATG(A/T)TAGTA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD89 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV Loss 18971310

Relevant External Links for SNORD89 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD89 Gene

Disorders for SNORD89 Gene

No disorders were found for SNORD89 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD89 Gene

Publications for SNORD89 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD89 Gene

Sources for SNORD89 Gene

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