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SNORD89 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 89

GCID:
GC02M101272
GIFtS:
19
Genes Participants
UDN Logo

Aliases for SNORD89 Gene

Subcategory (RNA class) for SNORD89 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD89 Gene

  • Small Nucleolar RNA, C/D Box 89 2 3 5
  • HBII-289 3

External Ids for SNORD89 Gene

ORGUL Members for SNORD89 Gene

Previous GeneCards Identifiers for SNORD89 Gene

  • GC02U900834
  • GC02M101255
  • GC02M101889
  • GC02M095653

Summaries for SNORD89 Gene

GeneCards Summary for SNORD89 Gene

SNORD89 (Small Nucleolar RNA, C/D Box 89) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD89 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD89 Gene

Genomics for SNORD89 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD89 Gene

Promoters and enhancers for SNORD89 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02I101305 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 39.1 -35.6 -35590 7.2 HDGF SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 RNF149 LOC105373512 MIR5696 SNORD89 IL1R1 MAP4K4 RPL31 GC02M101274
GH02I101250 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 29.2 +20.0 20024 4.1 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B TBC1D8 CNOT11 SNORD89 RNF149 LOC105373511
GH02I101236 Enhancer 1.3 Ensembl ENCODE dbSUPER 40.1 +34.0 33953 4.3 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 PAF1 MIER2 REST PPARG SNORD89 RNF149 TBC1D8 CNOT11 TBC1D8-AS1
GH02I101233 Enhancer 0.9 ENCODE 28.3 +38.6 38550 1.8 ELF3 FOXA2 MLX DMAP1 THRB ZNF48 ZSCAN9 RARA SLC30A9 TCF12 SNORD89 RNF149 CNOT11 TBC1D8 TBC1D8-AS1
GH02I101301 Enhancer 0.5 dbSUPER 39.6 -29.0 -29003 0.7 SMARCE1 CTBP1 PRDM6 ZNF157 TCF7L2 SNORD89 CHST10 RNF149 GC02M101274
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD89 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD89 gene promoter:

Genomic Locations for SNORD89 Gene

Genomic Locations for SNORD89 Gene
chr2:101,272,936-101,273,049
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand
chr2:101,889,398-101,889,511
(GRCh37/hg19)

Genomic View for SNORD89 Gene

Genes around SNORD89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD89 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD89 Gene

Proteins for SNORD89 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD89 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD89 Gene

Domains & Families for SNORD89 Gene

Gene Families for SNORD89 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD89: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD89 Gene

Function for SNORD89 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD89 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD89 Gene

Localization for SNORD89 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD89 Gene

Pathways & Interactions for SNORD89 Gene

SuperPathways for SNORD89 Gene

PathCards logo More details on SuperPathways for SNORD89
No Data Available

Interacting Proteins for SNORD89 Gene

Gene Ontology (GO) - Biological Process for SNORD89 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD89 Gene

Drugs & Compounds for SNORD89 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD89 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD89 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD89 Gene

Small nucleolar RNA, C/D box 89:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD89 Gene

No ASD Table

Relevant External Links for SNORD89 Gene

GeneLoc Exon Structure for
SNORD89
ECgene alternative splicing isoforms for
SNORD89

Expression for SNORD89 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD89 Gene

mRNA expression in normal human tissues for SNORD89 Gene
mRNA expression by GTEx for SNORD89 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD89 Gene

This gene is overexpressed in Whole Blood (x9.5).

NURSA nuclear receptor signaling pathways regulating expression of SNORD89 Gene:

SNORD89

SOURCE GeneReport for Unigene cluster for SNORD89 Gene:

Hs.656503
genes like me logo Genes that share expression patterns with SNORD89: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD89 Gene

Orthologs for SNORD89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD89 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD89 34
  • 100 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Snord89 34
  • 91 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD89 34
  • 89 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD89 34
  • 86 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD89 34
  • 84 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD89 34 34
  • 75 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves SNORD89 34
  • 82 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SNORD89 34
  • 73 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii SNORD89 34
  • 61 (a)
 OneToOne
Species where no ortholog for SNORD89 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD89 Gene

ENSEMBL:
Gene Tree for SNORD89 (if available)
TreeFam:
Gene Tree for SNORD89 (if available)

Paralogs for SNORD89 Gene

No data available for Paralogs for SNORD89 Gene

Variants for SNORD89 Gene

Sequence variations from dbSNP and Humsavar for SNORD89 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1002729147 -- 101,273,702(-) G/A upstream_transcript_variant
rs1003701737 -- 101,272,631(-) T/C downstream_transcript_variant
rs1004142389 -- 101,274,849(-) C/T upstream_transcript_variant
rs1004328004 -- 101,274,465(-) T/C upstream_transcript_variant
rs1004924206 -- 101,273,037(-) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD89 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV loss 18971310

Additional Variant Information for SNORD89 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD89

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD89 Gene

Disorders for SNORD89 Gene

Additional Disease Information for SNORD89

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD89 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD89 Gene

Publications for SNORD89 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD89 Gene

Sources for SNORD89 Gene

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