Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD89 Gene

Subcategory (RNA class) for SNORD89 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD89 Gene

  • Small Nucleolar RNA, C/D Box 89 2 3
  • HBII-289 3

External Ids for SNORD89 Gene

ORGUL Members for SNORD89 Gene

Summaries for SNORD89 Gene

GeneCards Summary for SNORD89 Gene

SNORD89 (Small Nucleolar RNA, C/D Box 89) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD89 Gene

Genomics for SNORD89 Gene

Genomic Location for SNORD89 Gene

Start:
101,272,936 bp from pter
End:
101,273,049 bp from pter
Size:
114 bases
Orientation:
Minus strand

Genomic View for SNORD89 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD89 Gene

Regulatory Elements for SNORD89 Gene

Proteins for SNORD89 Gene

Post-translational modifications for SNORD89 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD89 Gene

Domains for SNORD89 Gene

Gene Families for SNORD89 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD89: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD89 Gene

Function for SNORD89 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD89 Gene

Localization for SNORD89 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD89 Gene

Pathways for SNORD89 Gene

SuperPathways for SNORD89 Gene

No Data Available

Interacting Proteins for SNORD89 Gene

Gene Ontology (GO) - Biological Process for SNORD89 Gene

None

No data available for Pathways by source for SNORD89 Gene

Transcripts for SNORD89 Gene

mRNA/cDNA for SNORD89 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD89 Gene

Small nucleolar RNA, C/D box 89:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD89 Gene

No ASD Table

Relevant External Links for SNORD89 Gene

GeneLoc Exon Structure for
SNORD89
ECgene alternative splicing isoforms for
SNORD89

Expression for SNORD89 Gene

mRNA expression in normal human tissues for SNORD89 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SNORD89 Gene

This gene is overexpressed in Whole Blood (9.5).

SOURCE GeneReport for Unigene cluster for SNORD89 Gene Hs.656503

genes like me logo Genes that share expressions with SNORD89: view

Orthologs for SNORD89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD89 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD89 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD89 37
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD89 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord89 16
Snord89 37
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD89 37
  • 75 (a)
OneToMany
SNORD89 37
  • 84 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD89 37
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD89 37
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD89 37
  • 73 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD89 37
  • 61 (a)
OneToOne
Species with no ortholog for SNORD89:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD89 Gene

ENSEMBL:
Gene Tree for SNORD89 (if available)
TreeFam:
Gene Tree for SNORD89 (if available)

Paralogs for SNORD89 Gene

No data available for Paralogs for SNORD89 Gene

Variants for SNORD89 Gene

Sequence variations from dbSNP and Humsavar for SNORD89 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs560369870 -- 101,272,444(+) AAATG(A/T)TAGTA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD89 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV Loss 18971310

Relevant External Links for SNORD89 Gene

HapMap Linkage Disequilibrium report
SNORD89

Disorders for SNORD89 Gene

No disorders were found for SNORD89 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD89 Gene

Publications for SNORD89 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD89 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD89
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD89
    • Block miRNA regulation of SNORD89 using miScript Target Protectors

    Sources for SNORD89 Gene

    Back to Top

    Content