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Aliases for SNORD89 Gene

Subcategory (RNA class) for SNORD89 Gene


Quality Score for this RNA gene is


Aliases for SNORD89 Gene

  • Small Nucleolar RNA, C/D Box 89 2 3 5
  • HBII-289 3

External Ids for SNORD89 Gene

ORGUL Members for SNORD89 Gene

Previous GeneCards Identifiers for SNORD89 Gene

  • GC02U900834
  • GC02M101255
  • GC02M101889
  • GC02M095653

Summaries for SNORD89 Gene

GeneCards Summary for SNORD89 Gene

SNORD89 (Small Nucleolar RNA, C/D Box 89) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD89 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD89 Gene

Genomics for SNORD89 Gene

Regulatory Elements for SNORD89 Gene

Enhancers for SNORD89 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H101305 1.8 FANTOM5 ENCODE dbSUPER 39.1 -35.6 -35590 7.2 HDGF FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 SNORD89 RNF149 IL1R1 MAP4K4 RPL31 GC02M101274
GH02H101236 1.4 Ensembl ENCODE dbSUPER 40 +34.0 33953 4.3 ELF3 FOXA2 MLX ZFP64 ARID4B DMAP1 ZSCAN9 RAD21 YY1 CREM SNORD89 RNF149 CNOT11 TBC1D8-AS1
GH02H101250 1.6 Ensembl ENCODE dbSUPER 29.2 +20.0 20024 4.1 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 SNORD89 RNF149 TBC1D8 LOC105373511
GH02H101233 0.9 ENCODE 28.2 +38.6 38551 1.8 ELF3 FOXA2 MLX DMAP1 THRB ZSCAN9 RARA TCF12 SLC30A9 MIXL1 SNORD89 RNF149 CNOT11 TBC1D8-AS1
GH02H101229 1.2 ENCODE dbSUPER 17.8 +41.9 41916 2.5 ELF3 TBP TBL1XR1 NFRKB ARID4B RAD21 YY1 TCF12 ZNF548 MIXL1 SNORD89 CNOT11 TBC1D8-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD89 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD89 Gene

Genomic Locations for SNORD89 Gene
114 bases
Minus strand

Genomic View for SNORD89 Gene

Genes around SNORD89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD89 Gene

Proteins for SNORD89 Gene

Post-translational modifications for SNORD89 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD89 Gene

Domains & Families for SNORD89 Gene

Gene Families for SNORD89 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD89: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD89 Gene

Function for SNORD89 Gene

Phenotypes From GWAS Catalog for SNORD89 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD89 Gene

Localization for SNORD89 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD89 Gene

Pathways & Interactions for SNORD89 Gene

SuperPathways for SNORD89 Gene

No Data Available

Interacting Proteins for SNORD89 Gene

Gene Ontology (GO) - Biological Process for SNORD89 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD89 Gene

Drugs & Compounds for SNORD89 Gene

No Compound Related Data Available

Transcripts for SNORD89 Gene

mRNA/cDNA for SNORD89 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD89 Gene

Small nucleolar RNA, C/D box 89:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD89 Gene

No ASD Table

Relevant External Links for SNORD89 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD89 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD89 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD89 Gene

This gene is overexpressed in Whole Blood (x9.5).

NURSA nuclear receptor signaling pathways regulating expression of SNORD89 Gene:


SOURCE GeneReport for Unigene cluster for SNORD89 Gene:

genes like me logo Genes that share expression patterns with SNORD89: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD89 Gene

Orthologs for SNORD89 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD89 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD89 34
  • 100 (a)
(Mus musculus)
Mammalia Snord89 34
  • 91 (a)
(Canis familiaris)
Mammalia SNORD89 34
  • 89 (a)
(Bos Taurus)
Mammalia SNORD89 34
  • 86 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD89 34
  • 84 (a)
(Monodelphis domestica)
Mammalia SNORD89 34 34
  • 75 (a)
(Gallus gallus)
Aves SNORD89 34
  • 82 (a)
(Anolis carolinensis)
Reptilia SNORD89 34
  • 73 (a)
(Danio rerio)
Actinopterygii SNORD89 34
  • 61 (a)
Species where no ortholog for SNORD89 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD89 Gene

Gene Tree for SNORD89 (if available)
Gene Tree for SNORD89 (if available)

Paralogs for SNORD89 Gene

No data available for Paralogs for SNORD89 Gene

Variants for SNORD89 Gene

Sequence variations from dbSNP and Humsavar for SNORD89 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1002729147 -- 101,273,702(+) TCCTG(A/G)GCTCA intron-variant, upstream-variant-2KB
rs1003701737 -- 101,272,631(+) GTTTA(C/T)ACCAA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1004142389 -- 101,274,849(+) TGGCA(C/T)GATCT intron-variant, upstream-variant-2KB
rs1004328004 -- 101,274,465(+) CCTTT(C/T)TCTCC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1004924206 -- 101,273,037(+) TTGTC(A/G)TCATT intron-variant, nc-transcript-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNORD89 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV loss 18971310

Relevant External Links for SNORD89 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD89 Gene

Disorders for SNORD89 Gene

Relevant External Links for SNORD89

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD89 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD89 Gene

Publications for SNORD89 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD89 Gene

Sources for SNORD89 Gene

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