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Aliases for SNORD87 Gene

Subcategory (RNA class) for SNORD87 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD87 Gene

  • Small Nucleolar RNA, C/D Box 87 2 3 5
  • C/D Box SnoRNA HBII-276 3
  • U87 SnoRNA 3
  • HBII-276 3
  • U87 3

External Ids for SNORD87 Gene

ORGUL Members for SNORD87 Gene

Previous GeneCards Identifiers for SNORD87 Gene

  • GC08M067998
  • GC08M067836
  • GC08M063327
  • GC08M067840

Summaries for SNORD87 Gene

Entrez Gene Summary for SNORD87 Gene

  • Small nucleolar RNAs (snoRNAs) of the C/D class, such as SNORD87, are involved in 2-prime-methylation of preribosomal RNA precursors (Gogolevskaya et al., 2002 [PubMed 12119114]).[supplied by OMIM, Aug 2008]

GeneCards Summary for SNORD87 Gene

SNORD87 (Small Nucleolar RNA, C/D Box 87) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD87 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD87 Gene

Genomics for SNORD87 Gene

GeneHancer (GH) Regulatory Elements for SNORD87 Gene

Promoters and enhancers for SNORD87 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I066921 Enhancer 0.3 ENCODE 550.8 +0.7 734 0.2 POLR2A GC08M066923 GC08M066924 SNORD87 SNHG6 MCMDC2
GH08I067028 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11.4 -106.4 -106417 1.9 PKNOX1 ATF1 ARID4B SIN3A FEZF1 BRCA1 GLIS2 NCOA1 REST KAT8 PPP1R42 LOC105375885 CSPP1 COPS5 SNHG6 SNORD87
GH08I066961 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 11.6 -39.7 -39676 2.4 PKNOX1 RAD21 ZNF335 GLIS2 ZNF366 SCRT2 RUNX3 SP3 CBFB KLF16 TCF24 SNHG6 SNORD87 PPP1R42 CSPP1 COPS5
GH08I066922 Promoter/Enhancer 1.6 Ensembl ENCODE 0.8 -2.1 -2050 5.1 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 SNHG6 ARFGEF1 C8orf44 CSPP1 TCF24 VCPIP1 GC08M066923 GC08M066924 SNORD87 MCMDC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD87 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD87 gene promoter:

Genomic Locations for SNORD87 Gene

Genomic Locations for SNORD87 Gene
chr8:66,922,467-66,922,555
(GRCh38/hg38)
Size:
89 bases
Orientation:
Minus strand
chr8:67,834,709-67,834,786
(GRCh37/hg19)

Genomic View for SNORD87 Gene

Genes around SNORD87 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD87 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD87 Gene

Proteins for SNORD87 Gene

Post-translational modifications for SNORD87 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD87 Gene

Domains & Families for SNORD87 Gene

Gene Families for SNORD87 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD87: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD87 Gene

Function for SNORD87 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD87 Gene

Localization for SNORD87 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD87 Gene

Pathways & Interactions for SNORD87 Gene

SuperPathways for SNORD87 Gene

No Data Available

Interacting Proteins for SNORD87 Gene

Gene Ontology (GO) - Biological Process for SNORD87 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD87 Gene

Drugs & Compounds for SNORD87 Gene

No Compound Related Data Available

Transcripts for SNORD87 Gene

mRNA/cDNA for SNORD87 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD87 Gene

No ASD Table

Relevant External Links for SNORD87 Gene

GeneLoc Exon Structure for
SNORD87
ECgene alternative splicing isoforms for
SNORD87

Expression for SNORD87 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD87 Gene:

SNORD87
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD87 Gene

Orthologs for SNORD87 Gene

Evolution for SNORD87 Gene

ENSEMBL:
Gene Tree for SNORD87 (if available)
TreeFam:
Gene Tree for SNORD87 (if available)

No data available for Orthologs for SNORD87 Gene

Paralogs for SNORD87 Gene

No data available for Paralogs for SNORD87 Gene

Variants for SNORD87 Gene

Sequence variations from dbSNP and Humsavar for SNORD87 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1003759190 -- 66,924,290(-) A/G upstream_transcript_variant
rs1004121260 -- 66,923,727(-) A/G upstream_transcript_variant
rs1005658670 -- 66,922,340(-) G/C downstream_transcript_variant
rs1005943049 -- 66,924,356(-) G/T upstream_transcript_variant
rs1006022119 -- 66,922,765(-) T/A upstream_transcript_variant

Additional Variant Information for SNORD87 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD87

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD87 Gene

Disorders for SNORD87 Gene

Additional Disease Information for SNORD87

No disorders were found for SNORD87 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD87 Gene

Publications for SNORD87 Gene

  1. U87 RNA, a novel C/D box small nucleolar RNA from mammalian cells. (PMID: 12119114) Gogolevskaya IK … Kramerov DA (Gene 2002) 2 3 58
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay. (PMID: 16226852) Makarova JA … Kramerov DA (Gene 2005) 3 58
  5. Effect of 1,19-bis(ethylamino)-5,10,15-triazanonadecane on human tumor xenografts. (PMID: 8062267) Dolan ME … Marton LJ (Cancer research 1994) 22 58

Products for SNORD87 Gene

Sources for SNORD87 Gene

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