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Aliases for SNORD86 Gene

Subcategory (RNA class) for SNORD86 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD86 Gene

  • Small Nucleolar RNA, C/D Box 86 2 3 5
  • U86 3

External Ids for SNORD86 Gene

ORGUL Members for SNORD86 Gene

Previous GeneCards Identifiers for SNORD86 Gene

  • GC20U900213
  • GC20P002613
  • GC20P002632
  • GC20P002640
  • GC20P002649
  • GC20P002663
  • GC20P002675
  • GC20P002687
  • GC20P002696
  • GC20P002706
  • GC20P002722
  • GC20P002734
  • GC20P002753
  • GC20P002781
  • GC20P002789
  • GC20P002824

Summaries for SNORD86 Gene

GeneCards Summary for SNORD86 Gene

SNORD86 (Small Nucleolar RNA, C/D Box 86) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD86 Gene

Genomics for SNORD86 Gene

Regulatory Elements for SNORD86 Gene

Enhancers for SNORD86 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F002752 0.9 ENCODE 10.4 +96.8 96843 0.2 ZNF76 KLF17 SIN3A ZNF48 RAD21 ZNF2 ZEB1 GLIS2 ZNF143 KLF7 VPS16 PTPRA PCED1A TMEM239 C20orf141 ENSG00000241690 EBF4 SNORD110 SNORD56 SNORD57
GH20F002751 0.8 ENCODE 10.4 +95.3 95333 0.2 ELF3 ZNF792 SAP130 ARID4B DMAP1 THRB RARA TEAD3 GATAD1 RERE VPS16 PTPRA PCED1A TMEM239 C20orf141 ENSG00000241690 EBF4 SNORD56 SNORD57 MIR1292
GH20F002750 0.8 ENCODE 10.4 +94.8 94817 0.8 KLF1 ZNF792 SUZ12 MAX THRB HBP1 GATAD1 RERE RFXANK ZNF366 VPS16 PTPRA PCED1A TMEM239 C20orf141 ENSG00000241690 EBF4 SNORD56 SNORD57 SNORD86
GH20F002753 0.7 ENCODE 10.4 +96.2 96223 0.2 CTCF NRF1 SIN3A NR3C1 GTF3C2 ZFHX2 POLR2A GABPB1 ZBTB26 ZNF785 VPS16 ZNF343 PTPRA PCED1A TMEM239 C20orf141 ENSG00000241690 EBF4 SNORD110 SNORD56
GH20F002559 0.6 Ensembl 10.9 -97.0 -96997 0.2 SOX13 ZBTB48 CEBPA NR2F6 EZH2 TMC2 MIR1292 NOP56 SNORD110 SNORD56 SNORD57 SNORD86 LOC105372504 GC20M002600
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD86 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD86 Gene

Chromosome:
20
Start:
2,656,097 bp from pter
End:
2,656,182 bp from pter
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD86 Gene

Genes around SNORD86 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD86 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD86 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD86 Gene

Proteins for SNORD86 Gene

Post-translational modifications for SNORD86 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD86 Gene

Domains & Families for SNORD86 Gene

Gene Families for SNORD86 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD86: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD86 Gene

Function for SNORD86 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD86 Gene

Localization for SNORD86 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD86 Gene

Pathways & Interactions for SNORD86 Gene

SuperPathways for SNORD86 Gene

No Data Available

Interacting Proteins for SNORD86 Gene

Gene Ontology (GO) - Biological Process for SNORD86 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD86 Gene

Transcripts for SNORD86 Gene

mRNA/cDNA for SNORD86 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD86 Gene

No ASD Table

Relevant External Links for SNORD86 Gene

GeneLoc Exon Structure for
SNORD86
ECgene alternative splicing isoforms for
SNORD86

Expression for SNORD86 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD86 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD86 Gene:

SNORD86
genes like me logo Genes that share expression patterns with SNORD86: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD86 Gene

Orthologs for SNORD86 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD86 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD86 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD86 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD86 35
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23187 35
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD86 35
  • 67 (a)
OneToOne
Species where no ortholog for SNORD86 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD86 Gene

ENSEMBL:
Gene Tree for SNORD86 (if available)
TreeFam:
Gene Tree for SNORD86 (if available)

Paralogs for SNORD86 Gene

No data available for Paralogs for SNORD86 Gene

Variants for SNORD86 Gene

Sequence variations from dbSNP and Humsavar for SNORD86 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs2273137 Likely benign 2,654,566(-) CAGGA(C/T)CTCAG nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense
rs8958 Likely benign 2,656,425(+) AACAC(C/T)CCAAA nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs112056040 -- 2,654,282(+) CTCTG(A/G)GCAAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115291519 -- 2,654,532(+) TTAGG(A/G)TACAA nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs11553605 -- 2,655,437(+) ACAAG(C/T)TGGAG nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SNORD86 Gene

Variant ID Type Subtype PubMed ID
nsv470535 CNV gain 18288195
nsv1057464 CNV gain 25217958
esv3644998 CNV gain 21293372

Relevant External Links for SNORD86 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD86

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD86 Gene

Disorders for SNORD86 Gene

Relevant External Links for SNORD86

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD86

No disorders were found for SNORD86 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD86 Gene

Publications for SNORD86 Gene

  1. U86, a novel snoRNA with an unprecedented gene organization in yeast. (PMID: 11594746) Filippini D. … Caffarelli E. (Biochem. Biophys. Res. Commun. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD86 Gene

Sources for SNORD86 Gene

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