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Aliases for SNORD83B Gene

Subcategory (RNA class) for SNORD83B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD83B Gene

  • Small Nucleolar RNA, C/D Box 83B 2 3 5
  • RNA, U83B Small Nucleolar 2 3
  • U83b Small Nucleolar RNA 3
  • U83b SnoRNA 3
  • RNU83B 3
  • U83B 3

External Ids for SNORD83B Gene

ORGUL Members for SNORD83B Gene

Previous HGNC Symbols for SNORD83B Gene

  • RNU83B

Previous GeneCards Identifiers for SNORD83B Gene

  • GC22M038041
  • GC22M038047
  • GC22M039709
  • GC22M022676
  • GC22M039334
  • GC22M039836
  • GC22M039848
  • GC22M039943
  • GC22M040632
  • GC22M041079
  • GC22M041477

Summaries for SNORD83B Gene

Entrez Gene Summary for SNORD83B Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD83B, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD83B, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD83B Gene

SNORD83B (Small Nucleolar RNA, C/D Box 83B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD83B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD83B Gene

Genomics for SNORD83B Gene

GeneHancer (GH) Regulatory Elements for SNORD83B Gene

Promoters and enhancers for SNORD83B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I039317 Enhancer 0.5 ENCODE 550.8 -0.6 -610 0.2 CTCF GLIS2 POLR2A PATZ1 GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83B SNORD83A RPL3
GH22I039313 Enhancer 0.5 ENCODE 550.8 0.0 -30 0.2 GLIS2 POLR2A PATZ1 SUPT5H GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83B SNORD83A RPL3
GH22I039318 Enhancer 0.5 ENCODE 550.8 +0.4 380 0.2 GLIS2 RXRA POLR2A PATZ1 ZNF24 SUPT5H GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83B SNORD83A RPL3 GC22P039299
GH22I039312 Enhancer 0.5 ENCODE 550.8 +1.1 1149 0.4 SMAD5 POLR2A PATZ1 SUPT5H GC22M042039 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83B RPL3 GC22P039299
GH22I039314 Enhancer 0.4 ENCODE 550.8 -0.4 -350 0.2 CTCF POLR2A GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD83A SNORD83B SYNGR1 PDGFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD83B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD83B gene promoter:

Genomic Locations for SNORD83B Gene

Genomic Locations for SNORD83B Gene
chr22:39,313,819-39,313,911
(GRCh38/hg38)
Size:
93 bases
Orientation:
Minus strand
chr22:39,709,824-39,709,916
(GRCh37/hg19)

Genomic View for SNORD83B Gene

Genes around SNORD83B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD83B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD83B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD83B Gene

Proteins for SNORD83B Gene

Post-translational modifications for SNORD83B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD83B Gene

Domains & Families for SNORD83B Gene

Gene Families for SNORD83B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD83B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD83B Gene

Function for SNORD83B Gene

Phenotypes From GWAS Catalog for SNORD83B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD83B Gene

Localization for SNORD83B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD83B Gene

Pathways & Interactions for SNORD83B Gene

SuperPathways for SNORD83B Gene

No Data Available

Interacting Proteins for SNORD83B Gene

Gene Ontology (GO) - Biological Process for SNORD83B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD83B Gene

Drugs & Compounds for SNORD83B Gene

No Compound Related Data Available

Transcripts for SNORD83B Gene

mRNA/cDNA for SNORD83B Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD83B Gene

No ASD Table

Relevant External Links for SNORD83B Gene

GeneLoc Exon Structure for
SNORD83B
ECgene alternative splicing isoforms for
SNORD83B

Expression for SNORD83B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD83B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD83B Gene:

SNORD83B
genes like me logo Genes that share expression patterns with SNORD83B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD83B Gene

Orthologs for SNORD83B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD83B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU83B 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoU83B 34
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoU83B 34
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord83b 34
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoU83B 34
  • 77 (a)
ManyToMany
Species where no ortholog for SNORD83B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD83B Gene

ENSEMBL:
Gene Tree for SNORD83B (if available)
TreeFam:
Gene Tree for SNORD83B (if available)

Paralogs for SNORD83B Gene

No data available for Paralogs for SNORD83B Gene

Variants for SNORD83B Gene

Sequence variations from dbSNP and Humsavar for SNORD83B Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000218282 -- 39,314,088(-) C/A upstream_transcript_variant
rs1000404930 -- 39,314,290(-) G/A upstream_transcript_variant
rs1001371968 -- 39,313,537(-) CC/CCC downstream_transcript_variant
rs1003467230 -- 39,314,005(-) T/A upstream_transcript_variant
rs1004519532 -- 39,313,428(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD83B Gene

Variant ID Type Subtype PubMed ID
nsv589033 CNV loss 21841781
nsv834198 CNV loss 17160897
nsv966110 CNV duplication 23825009

Additional Variant Information for SNORD83B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD83B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD83B Gene

Disorders for SNORD83B Gene

Additional Disease Information for SNORD83B

No disorders were found for SNORD83B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD83B Gene

Publications for SNORD83B Gene

  1. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SNORD83B Gene

Sources for SNORD83B Gene

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