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Aliases for SNORD83B Gene

Subcategory (RNA class) for SNORD83B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD83B Gene

  • Small Nucleolar RNA, C/D Box 83B 2 3 5
  • RNA, U83B Small Nucleolar 2 3
  • U83b Small Nucleolar RNA 3
  • U83b SnoRNA 3
  • RNU83B 3
  • U83B 3

External Ids for SNORD83B Gene

ORGUL Members for SNORD83B Gene

Previous HGNC Symbols for SNORD83B Gene

  • RNU83B

Previous GeneCards Identifiers for SNORD83B Gene

  • GC22M038041
  • GC22M038047
  • GC22M039709
  • GC22M022676
  • GC22M039334
  • GC22M039836
  • GC22M039848
  • GC22M039943
  • GC22M040632
  • GC22M041079

Summaries for SNORD83B Gene

Entrez Gene Summary for SNORD83B Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD83B, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD83B, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD83B Gene

SNORD83B (Small Nucleolar RNA, C/D Box 83B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD83B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD83B Gene

Genomics for SNORD83B Gene

Regulatory Elements for SNORD83B Gene

Enhancers for SNORD83B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H038768 1.5 Ensembl ENCODE dbSUPER 29.5 +544.9 544911 0.4 ZNF493 ZFP64 GLIS2 ZNF143 ZNF202 ZC3H11A TSHZ1 REST MIER2 ZNF623 DDX17 CSNK1E EIF3L TAB1 ENSG00000228274 CBY1 SNORD83B ENSG00000230912 PLA2G6 RPL3
GH22H039518 2 FANTOM5 Ensembl ENCODE dbSUPER 21.7 -210.5 -210473 12.3 MLX DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZFP41 SSRP1 ENSG00000272834 TAB1 ENSG00000230912 ATF4 ENSG00000228274 RPL3 CBY1 CBX6 SNORD83B CBX7
GH22H038502 1.4 ENCODE dbSUPER 24.1 +808.2 808199 5.6 HDGF PKNOX1 FOXA2 ARID4B FEZF1 DMAP1 YBX1 ZNF2 YY1 ZNF766 ENSG00000228274 SNORD83B DDX17 JOSD1 RPL3 PLA2G6 KDELR3 KCNJ4 SNORD83A GGA1
GH22H039315 1.2 ENCODE 26.6 -4.1 -4086 5.9 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 DDX17 RPL3 SNORD83B TNRC6B ENSG00000228274 SYNGR1 TAB1 SNORD83A ENSG00000273076 ENSG00000230149
GH22H039308 2 FANTOM5 Ensembl ENCODE dbSUPER 13.7 +3.6 3578 4.3 HDGF PKNOX1 MLX ARNT ZFP64 SIN3A FEZF1 ZNF2 ZNF143 FOS DDX17 RPL3 SYNGR1 APOBEC3A ENSG00000230149 SNORD83B ENSG00000273076 ENSG00000272669 ENSG00000225450 TAB1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD83B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD83B Gene

Genomic Locations for SNORD83B Gene
chr22:39,313,819-39,313,911
(GRCh38/hg38)
Size:
93 bases
Orientation:
Minus strand
chr22:39,709,824-39,709,916
(GRCh37/hg19)

Genomic View for SNORD83B Gene

Genes around SNORD83B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD83B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD83B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD83B Gene

Proteins for SNORD83B Gene

Post-translational modifications for SNORD83B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD83B Gene

Domains & Families for SNORD83B Gene

Gene Families for SNORD83B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD83B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD83B Gene

Function for SNORD83B Gene

Phenotypes From GWAS Catalog for SNORD83B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD83B Gene

Localization for SNORD83B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD83B Gene

Pathways & Interactions for SNORD83B Gene

SuperPathways for SNORD83B Gene

No Data Available

Interacting Proteins for SNORD83B Gene

Gene Ontology (GO) - Biological Process for SNORD83B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD83B Gene

Drugs & Compounds for SNORD83B Gene

No Compound Related Data Available

Transcripts for SNORD83B Gene

mRNA/cDNA for SNORD83B Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD83B Gene

No ASD Table

Relevant External Links for SNORD83B Gene

GeneLoc Exon Structure for
SNORD83B
ECgene alternative splicing isoforms for
SNORD83B

Expression for SNORD83B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD83B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD83B Gene:

SNORD83B
genes like me logo Genes that share expression patterns with SNORD83B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD83B Gene

Orthologs for SNORD83B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD83B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU83B 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoU83B 34
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoU83B 34
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord83b 34
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoU83B 34
  • 77 (a)
ManyToMany
Species where no ortholog for SNORD83B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD83B Gene

ENSEMBL:
Gene Tree for SNORD83B (if available)
TreeFam:
Gene Tree for SNORD83B (if available)

Paralogs for SNORD83B Gene

No data available for Paralogs for SNORD83B Gene

Variants for SNORD83B Gene

Sequence variations from dbSNP and Humsavar for SNORD83B Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000218282 -- 39,314,088(+) CAGAG(A/C)AGAAC intron-variant, upstream-variant-2KB
rs1000404930 -- 39,314,290(+) AGCAC(A/G)CTAGA intron-variant, upstream-variant-2KB
rs1001371968 -- 39,313,536(+) CCTCT(-/C)CCTTC intron-variant, downstream-variant-500B
rs1003467230 -- 39,314,005(+) TGTGT(A/T)GGCTT intron-variant, upstream-variant-2KB
rs1004519532 -- 39,313,428(+) CCATC(C/T)GGCAG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD83B Gene

Variant ID Type Subtype PubMed ID
nsv589033 CNV loss 21841781
nsv834198 CNV loss 17160897
nsv966110 CNV duplication 23825009

Relevant External Links for SNORD83B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD83B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD83B Gene

Disorders for SNORD83B Gene

Relevant External Links for SNORD83B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD83B

No disorders were found for SNORD83B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD83B Gene

Publications for SNORD83B Gene

  1. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD83B Gene

Sources for SNORD83B Gene

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