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Aliases for SNORD83A Gene

Subcategory (RNA class) for SNORD83A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD83A Gene

  • Small Nucleolar RNA, C/D Box 83A 2 3
  • RNA, U83A Small Nucleolar 2 3
  • RNU83A 3 6
  • U83a Small Nucleolar RNA 3
  • U83a SnoRNA 3
  • U83A 3

External Ids for SNORD83A Gene

ORGUL Members for SNORD83A Gene

Previous HGNC Symbols for SNORD83A Gene

  • RNU83A

Previous GeneCards Identifiers for SNORD83A Gene

  • GC22M038043
  • GC22M038044
  • GC22M039711
  • GC22M022677

Summaries for SNORD83A Gene

Entrez Gene Summary for SNORD83A Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD83A, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD83A, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD83A Gene

SNORD83A (Small Nucleolar RNA, C/D Box 83A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD83A Gene

Genomics for SNORD83A Gene

Regulatory Elements for SNORD83A Gene

Genomic Location for SNORD83A Gene

Start:
39,315,213 bp from pter
End:
39,315,307 bp from pter
Size:
95 bases
Orientation:
Minus strand

Genomic View for SNORD83A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD83A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD83A Gene

Proteins for SNORD83A Gene

Post-translational modifications for SNORD83A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD83A Gene

Domains for SNORD83A Gene

Gene Families for SNORD83A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD83A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD83A Gene

Function for SNORD83A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD83A Gene

Localization for SNORD83A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD83A Gene

Pathways for SNORD83A Gene

SuperPathways for SNORD83A Gene

No Data Available

Interacting Proteins for SNORD83A Gene

Gene Ontology (GO) - Biological Process for SNORD83A Gene

None

No data available for Pathways by source for SNORD83A Gene

Transcripts for SNORD83A Gene

mRNA/cDNA for SNORD83A Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD83A

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD83A Gene

No ASD Table

Relevant External Links for SNORD83A Gene

GeneLoc Exon Structure for
SNORD83A
ECgene alternative splicing isoforms for
SNORD83A

Expression for SNORD83A Gene

mRNA expression in normal human tissues for SNORD83A Gene

genes like me logo Genes that share expressions with SNORD83A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD83A Gene

Orthologs for SNORD83A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD83A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU83B 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoU83B 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoU83B 36
  • 65 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22077 36
  • 61 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoU83B 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoU83B 36
  • 76 (a)
OneToMany
snoU83B 36
  • 76 (a)
OneToMany
chicken
(Gallus gallus)
Aves snoU83B 36
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia snoU83B 36
  • 68 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii snoU83B 36
  • 57 (a)
OneToOne
Species with no ortholog for SNORD83A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD83A Gene

ENSEMBL:
Gene Tree for SNORD83A (if available)
TreeFam:
Gene Tree for SNORD83A (if available)

Paralogs for SNORD83A Gene

No data available for Paralogs for SNORD83A Gene

Variants for SNORD83A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD83A Gene

Variant ID Type Subtype PubMed ID
nsv834198 CNV Loss 17160897

Relevant External Links for SNORD83A Gene

HapMap Linkage Disequilibrium report
SNORD83A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD83A Gene

Disorders for SNORD83A Gene

No disorders were found for SNORD83A Gene.

No data available for UniProtKB/Swiss-Prot for SNORD83A Gene

Publications for SNORD83A Gene

  1. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S. … Simonic T. (Biochim. Biophys. Acta 2000) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD83A Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD83A
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD83A
    • Block miRNA regulation of SNORD83A using miScript Target Protectors

    Sources for SNORD83A Gene

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