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Aliases for SNORD82 Gene

Subcategory (RNA class) for SNORD82 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD82 Gene

  • Small Nucleolar RNA, C/D Box 82 2 3
  • RNU82 3 6
  • RNA, U82 Small Nucleolar 3
  • RNA, U82 Small Nuclear 2
  • U82 3
  • Z25 3

External Ids for SNORD82 Gene

ORGUL Members for SNORD82 Gene

Previous Symbols for SNORD82 Gene

  • RNU82

Summaries for SNORD82 Gene

Entrez Gene Summary for SNORD82 Gene

  • The majority of small nucleolar RNAs (snoRNAs) function as guide RNAs in the nucleotide modification of preribosomal RNA (pre-rRNA). C/D box snoRNAs, like SNORD82, are involved in site-specific 2-prime-O-ribose methylation of pre-rRNA (Rebane and Metspalu, 1999 [PubMed 10524220]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD82 Gene

SNORD82 (Small Nucleolar RNA, C/D Box 82) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD82 Gene

Genomics for SNORD82 Gene

Genomic Location for SNORD82 Gene

Start:
231,460,368 bp from pter
End:
231,460,442 bp from pter
Size:
75 bases
Orientation:
Minus strand

Genomic View for SNORD82 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD82 Gene

Regulatory Elements for SNORD82 Gene

Transcription factor binding sites by QIAGEN in the SNORD82 gene promoter:

Proteins for SNORD82 Gene

Post-translational modifications for SNORD82 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD82 Gene

Domains for SNORD82 Gene

Gene Families for SNORD82 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD82: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD82 Gene

Function for SNORD82 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD82 Gene

Localization for SNORD82 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD82 Gene

Pathways for SNORD82 Gene

SuperPathways for SNORD82 Gene

No Data Available

Interacting Proteins for SNORD82 Gene

Gene Ontology (GO) - Biological Process for SNORD82 Gene

None

No data available for Pathways by source for SNORD82 Gene

Transcripts for SNORD82 Gene

mRNA/cDNA for SNORD82 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD82 Gene

No ASD Table

Relevant External Links for SNORD82 Gene

GeneLoc Exon Structure for
SNORD82
ECgene alternative splicing isoforms for
SNORD82

Expression for SNORD82 Gene

mRNA expression in normal human tissues for SNORD82 Gene

genes like me logo Genes that share expressions with SNORD82: view

Orthologs for SNORD82 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD82 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD82 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD82 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord82 16
Snord82 37
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD82 37
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD82 37
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD82 37
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD82 37
  • 75 (a)
OneToOne
Species with no ortholog for SNORD82:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD82 Gene

ENSEMBL:
Gene Tree for SNORD82 (if available)
TreeFam:
Gene Tree for SNORD82 (if available)

Paralogs for SNORD82 Gene

No data available for Paralogs for SNORD82 Gene

Variants for SNORD82 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD82 Gene

Variant ID Type Subtype PubMed ID
nsv834567 CNV Gain 17160897

Relevant External Links for SNORD82 Gene

HapMap Linkage Disequilibrium report
SNORD82

No data available for Sequence variations from dbSNP and Humsavar for SNORD82 Gene

Disorders for SNORD82 Gene

No disorders were found for SNORD82 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD82 Gene

Publications for SNORD82 Gene

  1. Genomic organization and chromosomal localization of the human nucleolin gene. (PMID: 2394707) Srivastava M. … Burns A.L. (J. Biol. Chem. 1990) 2 3
  2. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S. … Simonic T. (Biochim. Biophys. Acta 2000) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. U82, a novel snoRNA identified from the fifth intron of human and mouse nucleolin gene. (PMID: 10524220) Rebane A. … Metspalu A. (Biochim. Biophys. Acta 1999) 3

Products for SNORD82 Gene

Sources for SNORD82 Gene

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