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Aliases for SNORD81 Gene

Subcategory (RNA class) for SNORD81 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD81 Gene

  • Small Nucleolar RNA, C/D Box 81 2 3
  • RNA, U104 Small Nucleolar 2 3
  • RNU104 3
  • U81 3
  • Z23 3

External Ids for SNORD81 Gene

ORGUL Members for SNORD81 Gene

Previous HGNC Symbols for SNORD81 Gene

  • RNU104

Previous GeneCards Identifiers for SNORD81 Gene

  • GC01U901412
  • GC01M172150
  • GC01M172161
  • GC01M172174
  • GC01M173833
  • GC01M173885
  • GC01M173897
  • GC01M173910
  • GC01M173923
  • GC01M173929
  • GC01M173954
  • GC01M173992

Summaries for SNORD81 Gene

GeneCards Summary for SNORD81 Gene

SNORD81 (Small Nucleolar RNA, C/D Box 81) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD81 include Subdural Empyema.

Additional gene information for SNORD81 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD81 Gene

Genomics for SNORD81 Gene

GeneHancer (GH) Regulatory Elements for SNORD81 Gene

Promoters and enhancers for SNORD81 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I173924 Enhancer 0.7 ENCODE 11.2 -61.9 -61876 2.4 MAX CEBPG ZNF644 YY1 ZNF316 POLR2A HNF4G NFE2 MAFK NFE2L2 ANKRD45 GAS5 SERPINC1 ZBTB37 SNORD81 CENPL DARS2 KLHL20 RNA5SP67 GC01M174041
GH01I173940 Enhancer 0.3 FANTOM5 11.1 -76.5 -76484 0.2 SERPINC1 ZBTB37 GAS5 SNORD81 KLHL20 RC3H1 GC01M174041 GC01M174042
GH01I174015 Enhancer 0.2 FANTOM5 10.5 -150.9 -150943 0.2 RC3H1-IT1 ZBTB37 SERPINC1 GAS5 SNORD81 RC3H1 GPR52 GC01M174037 RNA5SP68
GH01I173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.8 -2.5 -2543 10.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZBTB37 GC01M174026 GC01M174027 GC01M174029 GC01M174030 GC01M174031 GC01M174033 GC01M174034 GC01M174035 GC01M174036
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD81 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD81 gene promoter:

Genomic Locations for SNORD81 Gene

Genomic Locations for SNORD81 Gene
chr1:173,864,175-173,864,217
(GRCh38/hg38)
Size:
43 bases
Orientation:
Minus strand
chr1:173,833,313-173,833,355
(GRCh37/hg19)

Genomic View for SNORD81 Gene

Genes around SNORD81 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD81 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD81 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD81 Gene

Proteins for SNORD81 Gene

Post-translational modifications for SNORD81 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD81 Gene

Domains & Families for SNORD81 Gene

Gene Families for SNORD81 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD81: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD81 Gene

Function for SNORD81 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD81 Gene

Localization for SNORD81 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD81 Gene

Pathways & Interactions for SNORD81 Gene

SuperPathways for SNORD81 Gene

No Data Available

Interacting Proteins for SNORD81 Gene

Gene Ontology (GO) - Biological Process for SNORD81 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD81 Gene

Drugs & Compounds for SNORD81 Gene

No Compound Related Data Available

Transcripts for SNORD81 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD81 Gene

No ASD Table

Relevant External Links for SNORD81 Gene

GeneLoc Exon Structure for
SNORD81
ECgene alternative splicing isoforms for
SNORD81

No data available for mRNA/cDNA for SNORD81 Gene

Expression for SNORD81 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD81 Gene:

SNORD81
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD81 Gene

Orthologs for SNORD81 Gene

No data available for Orthologs and Evolution for SNORD81 Gene

Paralogs for SNORD81 Gene

No data available for Paralogs for SNORD81 Gene

Variants for SNORD81 Gene

Sequence variations from dbSNP and Humsavar for SNORD81 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000390155 -- 173,863,801(-) A/G downstream_transcript_variant
rs1001615710 -- 173,864,655(-) C/A upstream_transcript_variant
rs1002607397 -- 173,866,052(-) A/C upstream_transcript_variant
rs1002617054 -- 173,865,916(-) A/G upstream_transcript_variant
rs1002649601 -- 173,865,510(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD81 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for SNORD81 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD81

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD81 Gene

Disorders for SNORD81 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD81 Gene - From: DISEASES

Disorder Aliases PubMed IDs
subdural empyema
  • subdural abscess
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD81

genes like me logo Genes that share disorders with SNORD81: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD81 Gene

Publications for SNORD81 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski KT … Steitz JA (Current biology : CB 2004) 2 3 58
  2. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. (PMID: 9819378) Smith CM … Steitz JA (Molecular and cellular biology 1998) 2 3 58
  3. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD81 Gene

Sources for SNORD81 Gene

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