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Aliases for SNORD8 Gene

Subcategory (RNA class) for SNORD8 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD8 Gene

  • Small Nucleolar RNA, C/D Box 8 2 3 5
  • RNA, U6C Small Nucleolar 2 3
  • MgU6-53 3
  • RNU6C 3

External Ids for SNORD8 Gene

ORGUL Members for SNORD8 Gene

Previous HGNC Symbols for SNORD8 Gene

  • RNU6C

Previous GeneCards Identifiers for SNORD8 Gene

  • GC14M020937
  • GC14M021865
  • GC14M001985

Summaries for SNORD8 Gene

GeneCards Summary for SNORD8 Gene

SNORD8 (Small Nucleolar RNA, C/D Box 8) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD8 Gene

Genomics for SNORD8 Gene

Regulatory Elements for SNORD8 Gene

Enhancers for SNORD8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F021241 0.4 ENCODE 12.1 +156.0 155995 0.2 CTCF ZNF316 POLR2A RAD21 MAFK SUPT5H SNORD8 UBA52P2 SNORD9 HNRNPC SUPT16H GC14P021259 GC14P021210 GC14P021211
GH14F021352 1 Ensembl ENCODE 11.8 +44.8 44836 0.9 NR2F1 MLLT1 NR2F6 NFE2 SPI1 NR2C2 SNORD9 SNORD8 UBA52P2 RPGRIP1 ENSG00000257096 SALL2 SUPT16H ENSG00000260830 MRPS17P6
GH14F021436 0.2 ENCODE 11.2 -40.0 -39972 2.5 PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 METTL3 SUPT16H SNORD8 UBA52P2 SNORD9 APEX1 ENSG00000257096 SALL2 TOX4 RN7SL650P
GH14F021258 0.5 ENCODE 11.2 +138.4 138365 0.2 PAF1 SSRP1 SMAD5 POLR2A SUPT5H SNORD8 UBA52P2 SNORD9 RPGRIP1 GC14P021259 GC14P021210 GC14P021211
GH14F021256 1.1 Ensembl ENCODE 11.2 +140.1 140085 2.4 PAF1 CEBPB CEBPG OSR2 SSRP1 POLR2A CEBPA GLIS1 PRDM10 SUPT5H RPGRIP1 SNORD9 SNORD8 UBA52P2 TRAV8-5 GC14P021259 GC14P021210 GC14P021211
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD8 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD8 Gene

Chromosome:
14
Start:
21,397,292 bp from pter
End:
21,397,401 bp from pter
Size:
110 bases
Orientation:
Minus strand

Genomic View for SNORD8 Gene

Genes around SNORD8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD8 Gene

Proteins for SNORD8 Gene

Post-translational modifications for SNORD8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD8 Gene

Domains & Families for SNORD8 Gene

Gene Families for SNORD8 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD8 Gene

Function for SNORD8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD8 Gene

Localization for SNORD8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD8 Gene

Pathways & Interactions for SNORD8 Gene

SuperPathways for SNORD8 Gene

No Data Available

Interacting Proteins for SNORD8 Gene

Gene Ontology (GO) - Biological Process for SNORD8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD8 Gene

Transcripts for SNORD8 Gene

mRNA/cDNA for SNORD8 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD8 Gene

Small nucleolar RNA, C/D box 8:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD8 Gene

No ASD Table

Relevant External Links for SNORD8 Gene

GeneLoc Exon Structure for
SNORD8
ECgene alternative splicing isoforms for
SNORD8

Expression for SNORD8 Gene

mRNA expression in normal human tissues for SNORD8 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD8 Gene:

SNORD8

SOURCE GeneReport for Unigene cluster for SNORD8 Gene:

Hs.680078
genes like me logo Genes that share expression patterns with SNORD8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD8 Gene

Orthologs for SNORD8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU6-53 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoU6-53 35
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoU6-53 35
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord8 35
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoU6-53 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoU6-53 35
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia snoU6-53 35
  • 71 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii snoU6-53 35 35 35
  • 69 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea snoU6-53 35 35
  • 61 (a)
ManyToMany
Species where no ortholog for SNORD8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD8 Gene

ENSEMBL:
Gene Tree for SNORD8 (if available)
TreeFam:
Gene Tree for SNORD8 (if available)

Paralogs for SNORD8 Gene

No data available for Paralogs for SNORD8 Gene

Variants for SNORD8 Gene

Sequence variations from dbSNP and Humsavar for SNORD8 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs879255360 Uncertain significance 21,397,934(-) TAATA(C/T)CATGA upstream-variant-2KB, reference, missense
rs10151764 -- 21,397,100(+) TTGTA(G/T)GGTTC intron-variant, downstream-variant-500B
rs112106286 -- 21,396,830(+) GTGGC(A/C)TCCCA intron-variant, downstream-variant-500B
rs112247277 -- 21,398,670(+) TTAAC(A/G)CTTAC intron-variant, upstream-variant-2KB
rs112902986 -- 21,397,094(+) TTTCA(C/T)TTGTA intron-variant, downstream-variant-500B

Relevant External Links for SNORD8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD8 Gene

Disorders for SNORD8 Gene

Relevant External Links for SNORD8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD8

No disorders were found for SNORD8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD8 Gene

Publications for SNORD8 Gene

  1. Nucleolar factors direct the 2'-O-ribose methylation and pseudouridylation of U6 spliceosomal RNA. (PMID: 10490628) Ganot P. … Kiss T. (Mol. Cell. Biol. 1999) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD8 Gene

Sources for SNORD8 Gene

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