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Aliases for SNORD72 Gene

Subcategory (RNA class) for SNORD72 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD72 Gene

  • Small Nucleolar RNA, C/D Box 72 2 3 5
  • HBII-240 Small Nucleolar RNA 3
  • C/D Box SnoRNA HBII-240 3
  • HBII-240 3

External Ids for SNORD72 Gene

ORGUL Members for SNORD72 Gene

Previous GeneCards Identifiers for SNORD72 Gene

  • GC05M040868
  • GC05M040784

Summaries for SNORD72 Gene

GeneCards Summary for SNORD72 Gene

SNORD72 (Small Nucleolar RNA, C/D Box 72) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD72 Gene

Genomics for SNORD72 Gene

Regulatory Elements for SNORD72 Gene

Enhancers for SNORD72 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G040802 1 ENCODE 12.2 +30.6 30622 0.2 ATF1 CREB3L1 ARNT TCF12 ZNF766 GATA2 NCOA1 ZNF592 MEF2D CREB3 RPL37 SNORD72 CARD6 PRKAA1 GC05P040818
GH05G040783 0.9 ENCODE 11.5 +48.0 47999 2.5 ELF3 FOXA2 MLX ARID4B ZSCAN9 RAD21 YY1 RARA GATA4 EGR1 CARD6 TTC33 SNORD72 RPL37 GC05M040791 ENSG00000212567
GH05G040832 1.5 ENCODE dbSUPER 0.7 -1.7 -1744 4.7 MLX CREB3L1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 PRKAA1 CARD6 PLCXD3 TTC33 GC05M040833 RPL37 SNORD72
GH05G040831 0.6 ENCODE 0.7 +0.7 722 0.2 PAF1 FOXA2 JUNB FOXA1 POLR2A ZFP3 CREB1 RBFOX2 SUPT5H GC05M040833 SNORD72 LOC100506548
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD72 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD72 Gene

Chromosome:
5
Start:
40,832,656 bp from pter
End:
40,832,735 bp from pter
Size:
80 bases
Orientation:
Minus strand

Genomic View for SNORD72 Gene

Genes around SNORD72 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD72 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD72 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD72 Gene

Proteins for SNORD72 Gene

Post-translational modifications for SNORD72 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD72 Gene

Domains & Families for SNORD72 Gene

Gene Families for SNORD72 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD72: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD72 Gene

Function for SNORD72 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD72 Gene

Localization for SNORD72 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD72 Gene

Pathways & Interactions for SNORD72 Gene

SuperPathways for SNORD72 Gene

No Data Available

Interacting Proteins for SNORD72 Gene

Gene Ontology (GO) - Biological Process for SNORD72 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD72 Gene

Drugs & Compounds for SNORD72 Gene

No Compound Related Data Available

Transcripts for SNORD72 Gene

mRNA/cDNA for SNORD72 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD72 Gene

No ASD Table

Relevant External Links for SNORD72 Gene

GeneLoc Exon Structure for
SNORD72
ECgene alternative splicing isoforms for
SNORD72

Expression for SNORD72 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD72 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD72 Gene:

SNORD72
genes like me logo Genes that share expression patterns with SNORD72: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD72 Gene

Orthologs for SNORD72 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD72 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD72 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD72 35
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord72 35
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD72 35
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD72 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD72 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD72 35
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD72 35
  • 75 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD72 35 35
  • 78 (a)
OneToMany
Species where no ortholog for SNORD72 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD72 Gene

ENSEMBL:
Gene Tree for SNORD72 (if available)
TreeFam:
Gene Tree for SNORD72 (if available)

Paralogs for SNORD72 Gene

No data available for Paralogs for SNORD72 Gene

Variants for SNORD72 Gene

Sequence variations from dbSNP and Humsavar for SNORD72 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1001162175 -- 40,832,939(+) AAAAA(A/C)AATTA intron-variant, upstream-variant-2KB
rs1003113881 -- 40,832,281(+) AATTC(G/T)GCTTG downstream-variant-500B, utr-variant-3-prime
rs1003623005 -- 40,834,345(+) TTTAT(A/G)CCACC intron-variant, upstream-variant-2KB
rs1004807227 -- 40,834,074(+) TCCAA(C/T)ATCTC intron-variant, upstream-variant-2KB
rs1005305548 -- 40,832,340(+) TTCCA(A/G)AACAG downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SNORD72 Gene

Variant ID Type Subtype PubMed ID
nsv518711 CNV loss 19592680
nsv597877 CNV gain 21841781
nsv968907 CNV duplication 23825009

Relevant External Links for SNORD72 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD72

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD72 Gene

Disorders for SNORD72 Gene

Relevant External Links for SNORD72

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD72

No disorders were found for SNORD72 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD72 Gene

Publications for SNORD72 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD72 Gene

Sources for SNORD72 Gene

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