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Aliases for SNORD70 Gene

Subcategory (RNA class) for SNORD70 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD70 Gene

  • Small Nucleolar RNA, C/D Box 70 2 3 5
  • HBII-234 3
  • SNORD70A 3

External Ids for SNORD70 Gene

ORGUL Members for SNORD70 Gene

Previous GeneCards Identifiers for SNORD70 Gene

  • GC02U900832
  • GC02P202849
  • GC02P203141
  • GC02P194989

Summaries for SNORD70 Gene

GeneCards Summary for SNORD70 Gene

SNORD70 (Small Nucleolar RNA, C/D Box 70) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD70 Gene

Genomics for SNORD70 Gene

Regulatory Elements for SNORD70 Gene

Enhancers for SNORD70 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F202248 1 Ensembl ENCODE 12.1 -26.8 -26841 1.9 JUN MAX SIN3A POLR2A TRIM24 FOS NR2F6 ZNF584 RFX1 NR2F1 SNORD70 ENSG00000212309 RNU6-440P ENSG00000273456 FAM117B LOC100287425 NOP58
GH02F201805 1 Ensembl ENCODE 9.1 -469.3 -469287 2.4 PKNOX1 FEZF1 ZIC2 ZNF2 CTBP1 POLR2A PRDM10 ZNF600 MAFK ZNF680 ORC2 NOP58 LOC100420110 ALS2 FZD7 RNU6-440P LOC729224 ENSG00000212309 SNORD70 GC02P201809
GH02F202316 0.8 Ensembl ENCODE 10.9 +40.9 40908 1.7 POLR2A ZBTB48 SCRT2 SIN3A PRDM10 RAD21 NR2F2 ENSG00000212309 SNORD70 NOP58 ENSG00000273456 BMPR2 GC02M202314 GC02P202312
GH02F202187 0.7 ENCODE 9.9 -88.7 -88659 0.2 ELF3 SOX5 SAP130 CEBPG HMG20A ZBTB40 HNF1A TCF7 BCL6 ZNF433 NOP58 FZD7 LOC729224 SNORD70 ENSG00000212309 LOC105373842 PSMA2P3
GH02F202178 0.7 ENCODE 9.6 -97.9 -97919 0.2 CTCF ZNF654 TEAD1 TRIM22 REST RAD21 ZNF101 ZNF143 SMC3 PRDM1 FZD7 CDK15 LOC729224 KIAA2012 NOP58 ENSG00000212309 SNORD70 RNU6-440P PSMA2P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD70 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD70 Gene

Chromosome:
2
Start:
202,276,431 bp from pter
End:
202,276,518 bp from pter
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD70 Gene

Genes around SNORD70 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD70 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD70 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD70 Gene

Proteins for SNORD70 Gene

Post-translational modifications for SNORD70 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD70 Gene

Domains & Families for SNORD70 Gene

Gene Families for SNORD70 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD70: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD70 Gene

Function for SNORD70 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD70 Gene

Localization for SNORD70 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD70 Gene

Pathways & Interactions for SNORD70 Gene

SuperPathways for SNORD70 Gene

No Data Available

Interacting Proteins for SNORD70 Gene

Gene Ontology (GO) - Biological Process for SNORD70 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD70 Gene

Transcripts for SNORD70 Gene

mRNA/cDNA for SNORD70 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD70 Gene

No ASD Table

Relevant External Links for SNORD70 Gene

GeneLoc Exon Structure for
SNORD70
ECgene alternative splicing isoforms for
SNORD70

Expression for SNORD70 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD70 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD70 Gene:

SNORD70
genes like me logo Genes that share expression patterns with SNORD70: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD70 Gene

Orthologs for SNORD70 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD70 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD70 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD70 35
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord70 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD70 35
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD70 35
  • 84 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD70 35 35
  • 61 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD70 35
  • 68 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD70 35
  • 59 (a)
OneToMany
Species where no ortholog for SNORD70 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD70 Gene

ENSEMBL:
Gene Tree for SNORD70 (if available)
TreeFam:
Gene Tree for SNORD70 (if available)

Paralogs for SNORD70 Gene

No data available for Paralogs for SNORD70 Gene

Variants for SNORD70 Gene

Sequence variations from dbSNP and Humsavar for SNORD70 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs11397579 -- 202,275,015(+) TTCTA(-/C)CACCT intron-variant, upstream-variant-2KB
rs114050958 -- 202,274,609(+) GAAAG(A/G)TTCTC intron-variant, upstream-variant-2KB
rs114509221 -- 202,276,513(+) ACAAC(A/G)ATGAA intron-variant, nc-transcript-variant
rs116601501 -- 202,274,567(+) TTACA(A/G)TACTT intron-variant, upstream-variant-2KB
rs12463892 -- 202,276,494(+) ATTCG(G/T)CACTA intron-variant, nc-transcript-variant

Relevant External Links for SNORD70 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD70

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD70 Gene

Disorders for SNORD70 Gene

Relevant External Links for SNORD70

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD70

No disorders were found for SNORD70 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD70 Gene

Publications for SNORD70 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD70 Gene

Sources for SNORD70 Gene

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