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Aliases for SNORD7 Gene

Subcategory (RNA class) for SNORD7 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD7 Gene

  • Small Nucleolar RNA, C/D Box 7 2 3
  • MgU6-47 3
  • Z30 3

External Ids for SNORD7 Gene

Previous GeneCards Identifiers for SNORD7 Gene

  • GC17P030926
  • GC17P033901
  • GC17P030085
  • GC17P033905

Summaries for SNORD7 Gene

Entrez Gene Summary for SNORD7 Gene

  • This gene encodes a spliceosomal small nuclear RNA that has orthologs in S. pombe and D. melanogaster. In S. pombe, this gene is required for site-specific 2'-O-methylation of U6 snRNA at position A41. While this is not an essential gene for S. pombe growth, loss of this gene's function may result in a slight decrease in mRNA splicing efficiency. [provided by RefSeq, Oct 2008]

GeneCards Summary for SNORD7 Gene

SNORD7 (Small Nucleolar RNA, C/D Box 7) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD7 Gene

Genomics for SNORD7 Gene

Regulatory Elements for SNORD7 Gene

Genomic Location for SNORD7 Gene

Start:
35,573,657 bp from pter
End:
35,573,753 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for SNORD7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD7 Gene

Proteins for SNORD7 Gene

Post-translational modifications for SNORD7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD7 Gene

Domains for SNORD7 Gene

Gene Families for SNORD7 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD7 Gene

Function for SNORD7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD7 Gene

Localization for SNORD7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD7 Gene

Pathways for SNORD7 Gene

SuperPathways for SNORD7 Gene

No Data Available

Interacting Proteins for SNORD7 Gene

Gene Ontology (GO) - Biological Process for SNORD7 Gene

None

No data available for Pathways by source for SNORD7 Gene

Transcripts for SNORD7 Gene

mRNA/cDNA for SNORD7 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD7

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD7 Gene

No ASD Table

Relevant External Links for SNORD7 Gene

GeneLoc Exon Structure for
SNORD7
ECgene alternative splicing isoforms for
SNORD7

Expression for SNORD7 Gene

mRNA expression in normal human tissues for SNORD7 Gene

genes like me logo Genes that share expressions with SNORD7: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD7 Gene

Orthologs for SNORD7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD7 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snord7 16
Snord7 36
  • 87 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoZ30 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoZ30 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoZ30 36
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoZ30 36
  • 76 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia snoZ30 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves snoZ30 36
  • 77 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii snoZ30 36
  • 69 (a)
OneToOne
Species with no ortholog for SNORD7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD7 Gene

ENSEMBL:
Gene Tree for SNORD7 (if available)
TreeFam:
Gene Tree for SNORD7 (if available)

Paralogs for SNORD7 Gene

No data available for Paralogs for SNORD7 Gene

Variants for SNORD7 Gene

Sequence variations from dbSNP and Humsavar for SNORD7 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs1964509 -- 35,574,149(-) gtgat(C/T)acagg downstream-variant-500B
rs7211363 -- 35,571,770(+) aatta(C/G)ctggg upstream-variant-2KB
rs7212704 -- 35,571,878(+) gccac(C/T)gcact upstream-variant-2KB
rs9910166 -- 35,572,337(+) gcctg(C/T)aatcc upstream-variant-2KB
rs11080357 -- 35,571,914(+) GTGGA(A/G)TGGAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD7 Gene

Variant ID Type Subtype PubMed ID
nsv908079 CNV Loss 21882294
nsv2038 CNV Insertion 18451855

Relevant External Links for SNORD7 Gene

HapMap Linkage Disequilibrium report
SNORD7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNORD7 Gene

Disorders for SNORD7 Gene

No disorders were found for SNORD7 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD7 Gene

Publications for SNORD7 Gene

  1. The Schizosaccharomyces pombe mgU6-47 gene is required for 2'-O-methylation of U6 snRNA at A41. (PMID: 11842100) Zhou H. … Qu L.H. (Nucleic Acids Res. 2002) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. New gene functions in megakaryopoiesis and platelet formation. (PMID: 22139419) Gieger C. … Soranzo N. (Nature 2011) 3
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for SNORD7 Gene

Sources for SNORD7 Gene

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