Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD69 Gene

Subcategory (RNA class) for SNORD69 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD69 Gene

  • Small Nucleolar RNA, C/D Box 69 2 3 5
  • HBII-210 3

External Ids for SNORD69 Gene

ORGUL Members for SNORD69 Gene

Previous GeneCards Identifiers for SNORD69 Gene

  • GC03U900640
  • GC03P052701
  • GC03P052726
  • GC03P052696
  • GC03P052711
  • GC03P052721
  • GC03P052739
  • GC03P052744

Summaries for SNORD69 Gene

GeneCards Summary for SNORD69 Gene

SNORD69 (Small Nucleolar RNA, C/D Box 69) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD69 Gene

Genomics for SNORD69 Gene

Regulatory Elements for SNORD69 Gene

Enhancers for SNORD69 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G052668 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -22.1 -22079 3.7 HDGF FOXA2 PKNOX1 CREB3L1 MLX AGO1 ZFP64 ARID4B SIN3A DMAP1 PBRM1 SNORD69 NT5DC2 ITIH4 ITIH1 GLYCTK PRKCD TMEM110 WDR82 GNL3
GH03G052427 1.7 VISTA Ensembl ENCODE 9.6 -263.2 -263196 3.2 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 GATA2 ZNF143 FOS SP5 TNNC1 NISCH GLYCTK-AS1 MIR135A1 GLYCTK WDR82 GNL3 SNORD69 PBRM1 NT5DC2
GH03G052890 1.5 FANTOM5 Ensembl ENCODE 9.6 +199.9 199889 4.3 HDGF ATF1 FOXA2 MLX ARID4B DMAP1 YY1 ZNF207 FOS MXD4 ITIH4 ENSG00000243696 ITIH4-AS1 PBRM1 MUSTN1 SNORD69 ENSG00000222345 SNORD19 SNORD19B ENSG00000252787
GH03G052466 1.2 VISTA FANTOM5 dbSUPER 10.8 -224.6 -224556 3.0 ZNF740 MNT ZNF623 ZIC2 NR2F2 ZNF121 SMARCA4 POLR2A ZNF652 PRDM1 NT5DC2 SEMA3G STAB1 SMIM4 RNU6-856P RNU6ATAC16P PBRM1 GNL3 ENSG00000222345 ENSG00000252787
GH03G052719 1.1 Ensembl ENCODE dbSUPER 11.4 +28.7 28712 3.1 CBX3 ZNF680 MAX ZNF316 CBX5 EED TRIM24 MAFK MYC ZNF558 PBRM1 GNL3 SNORD69 ENSG00000222345 ENSG00000252787 SNORD19 SNORD19B ITIH1 STAB1 SFMBT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD69 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD69 Gene

Chromosome:
3
Start:
52,692,736 bp from pter
End:
52,692,812 bp from pter
Size:
77 bases
Orientation:
Plus strand

Genomic View for SNORD69 Gene

Genes around SNORD69 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD69 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD69 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD69 Gene

Proteins for SNORD69 Gene

Post-translational modifications for SNORD69 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD69 Gene

Domains & Families for SNORD69 Gene

Gene Families for SNORD69 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD69: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD69 Gene

Function for SNORD69 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD69 Gene

Localization for SNORD69 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD69 Gene

Pathways & Interactions for SNORD69 Gene

SuperPathways for SNORD69 Gene

No Data Available

Interacting Proteins for SNORD69 Gene

Gene Ontology (GO) - Biological Process for SNORD69 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD69 Gene

Drugs & Compounds for SNORD69 Gene

No Compound Related Data Available

Transcripts for SNORD69 Gene

mRNA/cDNA for SNORD69 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD69 Gene

No ASD Table

Relevant External Links for SNORD69 Gene

GeneLoc Exon Structure for
SNORD69
ECgene alternative splicing isoforms for
SNORD69

Expression for SNORD69 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD69 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD69 Gene:

SNORD69
genes like me logo Genes that share expression patterns with SNORD69: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD69 Gene

Orthologs for SNORD69 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD69 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD69 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD69 35
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD69 35
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord69 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD69 35
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD69 35
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD69 35
  • 63 (a)
OneToOne
Species where no ortholog for SNORD69 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD69 Gene

ENSEMBL:
Gene Tree for SNORD69 (if available)
TreeFam:
Gene Tree for SNORD69 (if available)

Paralogs for SNORD69 Gene

No data available for Paralogs for SNORD69 Gene

Variants for SNORD69 Gene

Sequence variations from dbSNP and Humsavar for SNORD69 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1002056045 -- 52,692,913(+) AATCA(C/T)AGATA downstream-variant-500B, reference, missense
rs1005852243 -- 52,691,398(+) TAAAA(G/T)TGGTC intron-variant, upstream-variant-2KB
rs1006451527 -- 52,692,890(+) GTCCC(C/T)TTGGA downstream-variant-500B, reference, synonymous-codon
rs1007612395 -- 52,692,572(+) TCGGC(C/T)TCCCA intron-variant, upstream-variant-2KB
rs1008077674 -- 52,692,231(+) TTTTA(A/G)TAGAG intron-variant, upstream-variant-2KB

Relevant External Links for SNORD69 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD69

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD69 Gene

Disorders for SNORD69 Gene

Relevant External Links for SNORD69

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD69

No disorders were found for SNORD69 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD69 Gene

Publications for SNORD69 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) (Nat. Genet. 2011) 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD69 Gene

Sources for SNORD69 Gene

Content
Loading form....