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Aliases for SNORD68 Gene

Subcategory (RNA class) for SNORD68 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD68 Gene

  • Small Nucleolar RNA, C/D Box 68 2 3 5
  • HBII-202 Small Nucleolar RNA 3
  • HBII-202 SnoRNA 3
  • HBII-202 3

External Ids for SNORD68 Gene

ORGUL Members for SNORD68 Gene

Previous GeneCards Identifiers for SNORD68 Gene

  • GC16P088157
  • GC16P089629
  • GC16P075323
  • GC16P089632
  • GC16P089636
  • GC16P089649
  • GC16P089658
  • GC16P089668
  • GC16P089563
  • GC16P089565
  • GC16P089568
  • GC16P089572

Summaries for SNORD68 Gene

GeneCards Summary for SNORD68 Gene

SNORD68 (Small Nucleolar RNA, C/D Box 68) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD68 Gene

Genomics for SNORD68 Gene

Regulatory Elements for SNORD68 Gene

Enhancers for SNORD68 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F088809 0.6 ENCODE 45 -750.2 -750153 4.4 HDGF PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SNORD68 GALNS LOC101927863 RPL13 ENSG00000260121 ENSG00000259877 ZNF778 CTU2 APRT SPG7
GH16F090032 0.6 ENCODE 33.8 +470.7 470738 0.2 HDGF ZNF133 INSM2 ZNF76 ZEB1 ZNF23 KLF7 ZNF548 ZNF391 SMARCA5 SNORD68 RPL13 LOC101927863 GAS8 ENSG00000259877 GAS8-AS1 GC16P090043
GH16F089401 1.3 FANTOM5 Ensembl ENCODE 15.7 -153.4 -153375 13.1 PKNOX1 ARID4B SIN3A FEZF1 ZNF2 YY1 FOS PAF1 MXD4 ZHX2 AFG3L1P LOC101927863 MC1R SPG7 ENSG00000259877 URAHP ENSG00000268218 SNORD68 RPL13 RNU6-430P
GH16F089558 0.2 ENCODE 13.3 +1.2 1196 7.9 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 RPL13 ENSG00000259877 CDK10 SNORD68 CTU2 TRAPPC2L ENSG00000268218 RNU6-430P LOC100289580 APRT
GH16F089503 1.2 FANTOM5 ENCODE 12.8 -54.4 -54447 6.1 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 RPL13 SPG7 SNORD68 CDT1 RNU6-430P APRT DBNDD1 ZNF276 SPATA2L ANKRD11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD68 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD68 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000512346 -530 2201 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for SNORD68 Gene

Chromosome:
16
Start:
89,561,430 bp from pter
End:
89,561,517 bp from pter
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD68 Gene

Genes around SNORD68 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD68 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD68 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD68 Gene

Proteins for SNORD68 Gene

Post-translational modifications for SNORD68 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD68 Gene

Domains & Families for SNORD68 Gene

Gene Families for SNORD68 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD68: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD68 Gene

Function for SNORD68 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD68 Gene

Localization for SNORD68 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD68 Gene

Pathways & Interactions for SNORD68 Gene

SuperPathways for SNORD68 Gene

No Data Available

Interacting Proteins for SNORD68 Gene

Gene Ontology (GO) - Biological Process for SNORD68 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD68 Gene

Drugs & Compounds for SNORD68 Gene

(2) Drugs for SNORD68 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Docetaxel Approved May 1996, Investigational Pharma Microtubulin disassembly inhibitor, Tubulin and VEGF inhibitor, Taxanes, Microtubule stabilizer 1918
Thalidomide Approved, Investigational, Withdrawn Pharma Immunomodulatory agent,sedative drug,angiogenesis inhibitor, Immunomodulatory agents, TNF-alpha synthesis inhibitor 1105
genes like me logo Genes that share compounds with SNORD68: view

Transcripts for SNORD68 Gene

mRNA/cDNA for SNORD68 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD68 Gene

No ASD Table

Relevant External Links for SNORD68 Gene

GeneLoc Exon Structure for
SNORD68
ECgene alternative splicing isoforms for
SNORD68

Expression for SNORD68 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD68 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD68 Gene:

SNORD68
genes like me logo Genes that share expression patterns with SNORD68: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD68 Gene

Orthologs for SNORD68 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD68 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoMBII-202 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoMBII-202 35
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord68 35
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoMBII-202 35
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoMBII-202 35
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoMBII-202 35
  • 80 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii snoMBII-202 35
  • 73 (a)
OneToOne
Species where no ortholog for SNORD68 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD68 Gene

ENSEMBL:
Gene Tree for SNORD68 (if available)
TreeFam:
Gene Tree for SNORD68 (if available)

Paralogs for SNORD68 Gene

No data available for Paralogs for SNORD68 Gene

Variants for SNORD68 Gene

Sequence variations from dbSNP and Humsavar for SNORD68 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1059175 -- 89,561,003(+) ACTTC(A/C)CAAGG upstream-variant-2KB, reference, missense
rs111335567 -- 89,559,510(+) GTCAG(A/G)AGATC upstream-variant-2KB
rs111886337 -- 89,559,434(+) GATTA(A/C/T)GTTGG upstream-variant-2KB
rs112370595 -- 89,560,285(+) GATGT(C/T)ACTGA upstream-variant-2KB
rs112532997 -- 89,561,995(+) TGCTT(C/T)GTATT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD68 Gene

Variant ID Type Subtype PubMed ID
esv2758670 CNV gain 17122850
esv3639587 CNV loss 21293372
esv3639588 CNV gain 21293372
nsv1063483 CNV gain 25217958
nsv1066382 CNV gain 25217958
nsv428331 CNV gain+loss 18775914
nsv471118 CNV gain 18288195
nsv482951 CNV loss 15286789
nsv509639 CNV insertion 20534489
nsv573738 CNV loss 21841781

Relevant External Links for SNORD68 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD68

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD68 Gene

Disorders for SNORD68 Gene

Relevant External Links for SNORD68

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD68

No disorders were found for SNORD68 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD68 Gene

Publications for SNORD68 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. The numerous modified nucleotides in eukaryotic ribosomal RNA. (PMID: 2247610) Maden B.E. (Prog. Nucleic Acid Res. Mol. Biol. 1990) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD68 Gene

Sources for SNORD68 Gene

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