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Aliases for SNORD66 Gene

Subcategory (RNA class) for SNORD66 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD66 Gene

  • Small Nucleolar RNA, C/D Box 66 2 3 5
  • HBII-142 3

External Ids for SNORD66 Gene

ORGUL Members for SNORD66 Gene

Previous GeneCards Identifiers for SNORD66 Gene

  • GC03U900639
  • GC03P185526
  • GC03P184043
  • GC03P181450

Summaries for SNORD66 Gene

GeneCards Summary for SNORD66 Gene

SNORD66 (Small Nucleolar RNA, C/D Box 66) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD66 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD66 Gene

Genomics for SNORD66 Gene

Regulatory Elements for SNORD66 Gene

Enhancers for SNORD66 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H184347 1.1 ENCODE dbSUPER 12.4 +22.5 22496 1 HDGF TBP TAL1 JUN BACH1 FOSL1 TCF12 ZNF316 CTBP1 POLR2A VWA5B2 SNORD66 EIF4G1 ALG3 CAMK2N2 EIF2B5 MIR1224 ABCF3 GC03P184344 GC03M184355
GH03H184154 1.3 ENCODE dbSUPER 10.3 -169.3 -169300 4 HDGF ARID4B SIN3A DMAP1 ZNF121 SLC30A9 GLIS2 ELK1 ZNF143 KLF7 EIF2B5 ECE2 EEF1AKMT4-ECE2 EEF1AKMT4 ALG3 ABCF3 CAMK2N2 PSMD2 VWA5B2 MIR1224
GH03H184371 1.2 Ensembl ENCODE 10.8 +46.0 46005 0 ELF3 TBP PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 RAD21 RARA LINC02054 FAM131A EIF4G1 SNORD66 LINC01840 EPHB3 PSMD2 THPO POLR2H
GH03H184160 1.1 Ensembl ENCODE dbSUPER 10.3 -164.8 -164839 1 FOXA2 JUNB BATF EED GLIS1 ZBTB33 FOS RUNX3 IKZF2 EIF2B5 ABCF3 CAMK2N2 ALG3 ECE2 EEF1AKMT4-ECE2 EEF1AKMT4 VWA5B2 MIR1224 EIF4G1
GH03H184351 0.8 ENCODE dbSUPER 12.3 +26.6 26565 1 JUND HNF4G HNF4A PRDM10 SNORD66 EIF4G1 ALG3 CAMK2N2 EIF2B5 MIR1224 VWA5B2 ABCF3 PSMD2 PIR35526
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD66 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD66 Gene

Chromosome:
3
Start:
184,325,696 bp from pter
End:
184,325,771 bp from pter
Size:
76 bases
Orientation:
Plus strand

Genomic View for SNORD66 Gene

Genes around SNORD66 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD66 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD66 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD66 Gene

Proteins for SNORD66 Gene

Post-translational modifications for SNORD66 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD66 Gene

Domains & Families for SNORD66 Gene

Gene Families for SNORD66 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD66: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD66 Gene

Function for SNORD66 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD66
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD66 Gene

Localization for SNORD66 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD66 Gene

Pathways & Interactions for SNORD66 Gene

SuperPathways for SNORD66 Gene

No Data Available

Interacting Proteins for SNORD66 Gene

Gene Ontology (GO) - Biological Process for SNORD66 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD66 Gene

Drugs & Compounds for SNORD66 Gene

No Compound Related Data Available

Transcripts for SNORD66 Gene

mRNA/cDNA for SNORD66 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD66
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD66 Gene

No ASD Table

Relevant External Links for SNORD66 Gene

GeneLoc Exon Structure for
SNORD66
ECgene alternative splicing isoforms for
SNORD66

Expression for SNORD66 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD66 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD66 Gene:

SNORD66
genes like me logo Genes that share expression patterns with SNORD66: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD66 Gene

Orthologs for SNORD66 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD66 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD66 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD66 34
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD66 34
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord66 34
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD66 34
  • 83 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD66 34
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD66 34
  • 79 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD66 34 34 34
  • 77 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD66 34
  • 78 (a)
OneToMany
Species where no ortholog for SNORD66 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD66 Gene

ENSEMBL:
Gene Tree for SNORD66 (if available)
TreeFam:
Gene Tree for SNORD66 (if available)

Paralogs for SNORD66 Gene

No data available for Paralogs for SNORD66 Gene

Variants for SNORD66 Gene

Sequence variations from dbSNP and Humsavar for SNORD66 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000417291 -- 184,324,627(+) GCTAA(-/T)TTTTT intron-variant, upstream-variant-2KB
rs1001406159 -- 184,324,737(+) TGGGA(C/T)TACAG intron-variant, upstream-variant-2KB
rs1005072059 -- 184,324,290(+) AAAGA(C/T)AAAGA upstream-variant-2KB, reference, synonymous-codon
rs1007448641 -- 184,326,137(+) GGCAA(-/ACACACACACACAC)ACACA intron-variant, downstream-variant-500B
rs1008296092 -- 184,325,392(+) TCCTC(C/G/T)CCACT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD66 Gene

Variant ID Type Subtype PubMed ID
esv2422400 CNV duplication 17116639
nsv829813 CNV loss 17160897

Relevant External Links for SNORD66 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD66

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD66 Gene

Disorders for SNORD66 Gene

Relevant External Links for SNORD66

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD66

No disorders were found for SNORD66 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD66 Gene

Publications for SNORD66 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD66 Gene

Sources for SNORD66 Gene

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