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Aliases for SNORD65B Gene

Subcategory (RNA class) for SNORD65B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD65B Gene

  • Small Nucleolar RNA, C/D Box 65B 2 3 5

External Ids for SNORD65B Gene

ORGUL Members for SNORD65B Gene

Previous GeneCards Identifiers for SNORD65B Gene

  • GC00U936710
  • GC08U902667

Summaries for SNORD65B Gene

GeneCards Summary for SNORD65B Gene

SNORD65B (Small Nucleolar RNA, C/D Box 65B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD65B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD65B Gene

Genomics for SNORD65B Gene

Regulatory Elements for SNORD65B Gene

Enhancers for SNORD65B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H041430 0.7 ENCODE 0.7 +3.6 3622 0 SMARCA5 CTCF ZNF654 ZNF10 TRIM22 ELF1 REST ZNF2 RAD21 TEAD3 SNORD65B LOC105379391
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD65B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD65B Gene

Chromosome:
8
Start:
41,426,655 bp from pter
End:
41,426,727 bp from pter
Size:
73 bases
Orientation:
Plus strand

Genomic View for SNORD65B Gene

Genes around SNORD65B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD65B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD65B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORD65B Gene

Proteins for SNORD65B Gene

Post-translational modifications for SNORD65B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD65B Gene

Domains & Families for SNORD65B Gene

Gene Families for SNORD65B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD65B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD65B Gene

Function for SNORD65B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD65B Gene

Localization for SNORD65B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD65B Gene

Pathways & Interactions for SNORD65B Gene

SuperPathways for SNORD65B Gene

No Data Available

Interacting Proteins for SNORD65B Gene

Gene Ontology (GO) - Biological Process for SNORD65B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD65B Gene

Drugs & Compounds for SNORD65B Gene

No Compound Related Data Available

Transcripts for SNORD65B Gene

mRNA/cDNA for SNORD65B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD65B Gene

No ASD Table

Relevant External Links for SNORD65B Gene

GeneLoc Exon Structure for
SNORD65B
ECgene alternative splicing isoforms for
SNORD65B

Expression for SNORD65B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD65B Gene

Orthologs for SNORD65B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD65B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD65 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord65 34
  • 85 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD65 34
  • 84 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD65 34
  • 76 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD65 34
  • 71 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD65 34
  • 66 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD65 34
  • 68 (a)
ManyToMany
Species where no ortholog for SNORD65B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD65B Gene

ENSEMBL:
Gene Tree for SNORD65B (if available)
TreeFam:
Gene Tree for SNORD65B (if available)

Paralogs for SNORD65B Gene

No data available for Paralogs for SNORD65B Gene

Variants for SNORD65B Gene

Relevant External Links for SNORD65B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD65B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD65B Gene

Disorders for SNORD65B Gene

Relevant External Links for SNORD65B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD65B

No disorders were found for SNORD65B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD65B Gene

Publications for SNORD65B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60

Products for SNORD65B Gene

Sources for SNORD65B Gene

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