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Aliases for SNORD65 Gene

Subcategory (RNA class) for SNORD65 Gene


Quality Score for this RNA gene is


Aliases for SNORD65 Gene

  • Small Nucleolar RNA, C/D Box 65 2 3 5
  • HBII-135 3
  • SNORD65A 3

External Ids for SNORD65 Gene

ORGUL Members for SNORD65 Gene

Previous GeneCards Identifiers for SNORD65 Gene

  • GC17U900621
  • GC17P016294
  • GC17P016299
  • GC17P016344

Summaries for SNORD65 Gene

GeneCards Summary for SNORD65 Gene

SNORD65 (Small Nucleolar RNA, C/D Box 65) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD65 Gene

Genomics for SNORD65 Gene

Regulatory Elements for SNORD65 Gene

Enhancers for SNORD65 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F016438 0.8 ENCODE 0.8 +0.2 193 6.8 HDGF PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 RPL13P12 ENSG00000266538 LRRC75A-AS1 LOC644422 ACTG1P24 LRRC75A PIR35161 SNORD65
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD65 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD65 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SNORD65 Gene

16,441,226 bp from pter
16,441,298 bp from pter
73 bases
Plus strand

Genomic View for SNORD65 Gene

Genes around SNORD65 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD65 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD65 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD65 Gene

Proteins for SNORD65 Gene

Post-translational modifications for SNORD65 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD65 Gene

Domains & Families for SNORD65 Gene

Gene Families for SNORD65 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD65: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD65 Gene

Function for SNORD65 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD65 Gene

Localization for SNORD65 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD65 Gene

Pathways & Interactions for SNORD65 Gene

SuperPathways for SNORD65 Gene

No Data Available

Interacting Proteins for SNORD65 Gene

Gene Ontology (GO) - Biological Process for SNORD65 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD65 Gene

Transcripts for SNORD65 Gene

mRNA/cDNA for SNORD65 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD65 Gene

No ASD Table

Relevant External Links for SNORD65 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD65 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD65 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD65 Gene

Orthologs for SNORD65 Gene

Evolution for SNORD65 Gene

Gene Tree for SNORD65 (if available)
Gene Tree for SNORD65 (if available)

No data available for Orthologs for SNORD65 Gene

Paralogs for SNORD65 Gene

No data available for Paralogs for SNORD65 Gene

Variants for SNORD65 Gene

Sequence variations from dbSNP and Humsavar for SNORD65 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111566628 -- 16,441,091(+) GAGTG(A/C)TGTTT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111638511 -- 16,440,997(+) ATTAA(C/T)TGACT intron-variant, upstream-variant-2KB
rs112087561 -- 16,439,526(+) GTAAT(A/G)GGAAG intron-variant, nc-transcript-variant, upstream-variant-2KB, splice-acceptor-variant
rs112215248 -- 16,439,324(+) TGTGG(G/T)AGGGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112216069 -- 16,441,365(+) CTTTG(A/C)AGGTT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNORD65 Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
nsv1063764 CNV loss 25217958

Relevant External Links for SNORD65 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD65 Gene

Disorders for SNORD65 Gene

Relevant External Links for SNORD65

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD65 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD65 Gene

Publications for SNORD65 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD65 Gene

Sources for SNORD65 Gene

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