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Aliasesfor SNORD63 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section GeneCards Plus Subcategory (RNA class): snoRNAQuality score for this RNA gene is 3 Aliases Small Nucleolar RNA, C/D Box 63 1 2 RNU631 2 RNA, U63 Small Nucleolar1 U632
External Ids: HGNC: 10220 1 Entrez Gene: 26785 2 Ensembl: ENSG00000206989 7 Export aliases for SNORD63 gene to outside databases Previous GC identifers: GC05M137926 GC05M133087 GC05M137897
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Summariesfor SNORD63 gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section GeneCards Plus GeneCards Summary for SNORD63 Gene: SNORD63 (small nucleolar RNA, C/D box 63) is an RNA gene, and is affiliated with the snoRNA class.
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Genomic Viewsfor SNORD63 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section GeneCards Plus Regulatory elements: Regulatory transcription factor binding sites in the SNORD63 gene promoter:HOXA9B HOXA9 AML1a POU3F2 (N-Oct-5a) C/EBPalpha CHOP-10 POU2F1 POU2F1a Other transcription factors Search Chromatin IP Primers for SNORD63 Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SNORD63
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q31.2 Ensembl cytogenetic band: 5q31.2 HGNC cytogenetic band: 5q31.2 SNORD63 Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M137901: view genomic region
(about GC identifiers )
Start: 137,896,732 bp from pter End:
137,896,799 bp from pter
Size: 68 bases Orientation:
minus strand
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Proteinsfor SNORD63 gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section GeneCards Plus UniProtKB: --
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Domains /for SNORD63 gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section GeneCards Plus HGNC Gene Families: SNORD: ncRNAs / Small nucleolar RNAs : C/D box containing
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Functionfor SNORD63 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
Animal Models: Cell Line GenScript Custom overexpressing Cell Line Services for SNORD63 Browse ESI BIO Cell Lines and PureStem Progenitors for SNORD63 In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNORD63
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Localizationfor SNORD63 gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
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Pathways & Interactionsfor SNORD63 gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene) .
About This Section GeneCards Plus
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SNORD63 Interactions: Search GeneGlobe Interaction Network for SNORD63
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Drugs & Compoundsfor SNORD63 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB )
About This Section GeneCards Plus
Browse compounds at ApexBio Browse Tocris compounds for SNORD63
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Transcriptsfor SNORD63 gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section GeneCards Plus 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000384262(snoRNA) GeneLoc Exon Structure
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Expression for SNORD63 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GeneCards Plus
Expression evidence for SNORD63:none See probesets specificity/sensitivity at GeneAnnot CGAP TAG: --
SNORD63 Protein expression data from MOPED1 2 3 : Custom PCR Arrays for SNORD63 Primer Browse OriGene qPCR Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat SNORD63 Search QuantiTect SYBR Green Assays in human, mouse, rat SNORD63 Search QuantiFast Probe-based Assays in human, mouse, rat SNORD63 In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNORD63
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Orthologsfor SNORD63 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section GeneCards Plus Orthologs for SNORD63 gene from Selected species (see all 9 ) About this table
Organism
Taxonomic
Gene
Description
Human
Orthology
Details
chicken Aves SNORD636
Small nucleolar RNA SNORD63
74(a)
1 ↔ 1
13(2146299-2146368) ENSGALG00000025482
lizard Reptilia SNORD636
Small nucleolar RNA SNORD63
72(a)
1 → many
1(131023335-131023402)
zebrafish Actinopterygii SNORD636
Small nucleolar RNA SNORD63
66(a)
1 → many
5(17508348-17508403)
Species with no ortholog for SNORD63 ENSEMBL Gene Tree for SNORD63 (if available)TreeFam Gene Tree for SNORD63 (if available)
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Paralogsfor SNORD63 gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section GeneCards Plus
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Genomic Variantsfor SNORD63 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section GeneCards Plus Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor SNORD63 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section GeneCards Plus
Find genes that share disorders with SNORD63
About GenesLikeMe Genetic Association Database (GAD): SNORD63 Human Genome Epidemiology (HuGE) Navigator: SNORD63 (1 document)Export disorders for SNORD63 gene to outside databases
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Publicationsfor SNORD63 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section GeneCards Plus PubMed articles for SNORD63 gene integrated from 10 sources :(articles sorted by number of sources associating them with SNORD63) Utopia : connect your pdf to the dynamic
Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PubMed id 19240791) 1 , 4(PLoS ONE 2009) A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. (PubMed id 8962077) 1 , 3(Proc. Natl. Acad. Sci. U.S.A. 1996) Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PubMed id 19446021) 1 (Genomics 2009)
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External Searches for SNORD63 gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section GeneCards Plus
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Genome Databases showing SNORD63 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section GeneCards Plus
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Other Databases showing SNORD63 gene
(According to HUGE )
About This Section GeneCards Plus --
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Specialized Databases showing SNORD63 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section GeneCards Plus
Name Description PharmGKB entry for SNORD63 Pharmacogenomics, SNPs, Pathways
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About This Section GeneCards Plus Patent Information for SNORD63 gene: SNORD63 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SNORD63 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section GeneCards Plus
Block miRNA regulation of human, mouse, rat SNORD63 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing SNORD63 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SNORD63 Predesigned siRNA for gene silencing in human mouse rat Search QuantiFast Probe-based Assays in human, mouse, rat SNORD63 Search QuantiTect SYBR Green Assays in human, mouse, rat SNORD63 Custom PCR Arrays for SNORD63 Search Chromatin IP Primers for SNORD63 Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat SNORD63 Search GeneGlobe Interaction Network for SNORD63 Regulatory tfbs in SNORD63 promoter
Search Tocris compounds for SNORD63
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNORD63
Search ThermoFisher Antibodies for SNORD63
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat SNORD63
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