Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD62A Gene

Subcategory (RNA class) for SNORD62A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD62A Gene

  • Small Nucleolar RNA, C/D Box 62A 2 3
  • RNA, U62 Small Nucleolar 2 3
  • RNU62 3
  • U62A 3
  • U62 3

External Ids for SNORD62A Gene

Previous HGNC Symbols for SNORD62A Gene

  • RNU62

Previous GeneCards Identifiers for SNORD62A Gene

  • GC09P133350
  • GC09P134362
  • GC09P103855
  • GC09P134377
  • GC09P134383
  • GC09P134388

Summaries for SNORD62A Gene

GeneCards Summary for SNORD62A Gene

SNORD62A (Small Nucleolar RNA, C/D Box 62A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD62A Gene

Genomics for SNORD62A Gene

Regulatory Elements for SNORD62A Gene

Genomic Location for SNORD62A Gene

Start:
131,485,665 bp from pter
End:
131,485,750 bp from pter
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD62A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD62A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD62A Gene

Proteins for SNORD62A Gene

Post-translational modifications for SNORD62A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD62A Gene

Domains for SNORD62A Gene

Gene Families for SNORD62A Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD62A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD62A Gene

Function for SNORD62A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD62A Gene

Localization for SNORD62A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD62A Gene

Pathways for SNORD62A Gene

SuperPathways for SNORD62A Gene

No Data Available

Interacting Proteins for SNORD62A Gene

Gene Ontology (GO) - Biological Process for SNORD62A Gene

None

No data available for Pathways by source for SNORD62A Gene

Transcripts for SNORD62A Gene

mRNA/cDNA for SNORD62A Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD62A Gene

No ASD Table

Relevant External Links for SNORD62A Gene

GeneLoc Exon Structure for
SNORD62A
ECgene alternative splicing isoforms for
SNORD62A

Expression for SNORD62A Gene

mRNA expression in normal human tissues for SNORD62A Gene

genes like me logo Genes that share expressions with SNORD62A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD62A Gene

Orthologs for SNORD62A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD62A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD62 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD62 36
  • 94 (a)
OneToMany
SNORD62 36
  • 91 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD62 36
  • 65 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22192 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD62 36
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD62 36
  • 84 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD62 36
  • 71 (a)
OneToMany
Species with no ortholog for SNORD62A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD62A Gene

ENSEMBL:
Gene Tree for SNORD62A (if available)
TreeFam:
Gene Tree for SNORD62A (if available)

Paralogs for SNORD62A Gene

No data available for Paralogs for SNORD62A Gene

Variants for SNORD62A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD62A Gene

Variant ID Type Subtype PubMed ID
nsv831740 CNV Loss 17160897
essv2695 CNV CNV 17122850
dgv2424e1 CNV Complex 17122850
nsv818728 CNV Gain 17921354
esv34928 CNV Gain 17911159
nsv831741 CNV Loss 17160897
nsv517936 CNV Loss 19592680
nsv893990 CNV Loss 21882294
nsv893991 CNV Loss 21882294

Relevant External Links for SNORD62A Gene

HapMap Linkage Disequilibrium report
SNORD62A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD62A Gene

Disorders for SNORD62A Gene

No disorders were found for SNORD62A Gene.

No data available for UniProtKB/Swiss-Prot for SNORD62A Gene

Publications for SNORD62A Gene

  1. A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. (PMID: 8962077) Tycowski K.T. … Steitz J.A. (Proc. Natl. Acad. Sci. U.S.A. 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD62A Gene

Sources for SNORD62A Gene

Back to Top

Content