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Aliases for SNORD62A Gene

Subcategory (RNA class) for SNORD62A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD62A Gene

  • Small Nucleolar RNA, C/D Box 62A 2 3 5
  • RNA, U62 Small Nucleolar 2 3
  • RNU62 3
  • U62A 3
  • U62 3

External Ids for SNORD62A Gene

Previous HGNC Symbols for SNORD62A Gene

  • RNU62

Previous GeneCards Identifiers for SNORD62A Gene

  • GC09P133350
  • GC09P134362
  • GC09P103855
  • GC09P134377
  • GC09P134383
  • GC09P134388

Summaries for SNORD62A Gene

GeneCards Summary for SNORD62A Gene

SNORD62A (Small Nucleolar RNA, C/D Box 62A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD62A Gene

Genomics for SNORD62A Gene

Regulatory Elements for SNORD62A Gene

Enhancers for SNORD62A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F131401 1.1 ENCODE 11.2 -80.5 -80496 7.2 MLX ARID4B FEZF1 DMAP1 YBX1 ZNF2 YY1 ZNF207 FOS ZNF263 POMT1 FAM78A ENSG00000176868 SNORD62A SNORD62B LOC105376301 PRRC2B UCK1 GC09M131403 PIR32430
GH09F131177 1.1 Ensembl ENCODE 10.8 -305.9 -305852 3.7 CTCF KLF1 ZNF223 ZNF384 ZIC2 ZNF2 RAD21 YY1 ZFHX2 GATA3 FAM78A PLPP7 PRRC2B SNORD62A SNORD62B RNU6-881P NUP214 GC09M131159 ENSG00000246851
GH09F131429 1 Ensembl ENCODE 11.6 -56.0 -56023 1.3 ZNF493 ZNF175 YBX1 ZNF514 ZIC2 ZKSCAN1 ZNF239 SCRT2 ZNF600 ZNF548 SETX TTF1 ENSG00000236687 PRRC2B SNORD62A SNORD62B QRFP POMT1 LOC105376301 ENSG00000176868
GH09F131440 0.8 ENCODE 11.7 -44.1 -44115 1.3 HDAC1 PKNOX1 TAL1 SIN3A ZIC2 ZNF48 GLIS2 NCOR1 SCRT2 TRIM24 PRRC2B SNORD62A SNORD62B ENSG00000176868 POMT1 ENSG00000246851 LOC105376301 NUP214 PLPP7 PIR53214
GH09F131431 0.7 ENCODE 11.6 -52.4 -52393 2.6 SP5 HLF CEBPB RAD21 ZIC2 JUND SMARCA4 GLIS1 TCF7 HNF4G POMT1 PRRC2B SNORD62A SNORD62B ENSG00000176868 UCK1 PIR53214 PIR58994
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD62A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD62A Gene

Chromosome:
9
Start:
131,485,665 bp from pter
End:
131,485,750 bp from pter
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD62A Gene

Genes around SNORD62A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD62A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD62A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD62A Gene

Proteins for SNORD62A Gene

Post-translational modifications for SNORD62A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD62A Gene

Domains & Families for SNORD62A Gene

Gene Families for SNORD62A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD62A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD62A Gene

Function for SNORD62A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD62A Gene

Localization for SNORD62A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD62A Gene

Pathways & Interactions for SNORD62A Gene

SuperPathways for SNORD62A Gene

No Data Available

Interacting Proteins for SNORD62A Gene

Gene Ontology (GO) - Biological Process for SNORD62A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD62A Gene

Transcripts for SNORD62A Gene

mRNA/cDNA for SNORD62A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD62A Gene

No ASD Table

Relevant External Links for SNORD62A Gene

GeneLoc Exon Structure for
SNORD62A
ECgene alternative splicing isoforms for
SNORD62A

Expression for SNORD62A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD62A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD62A Gene:

SNORD62A
genes like me logo Genes that share expression patterns with SNORD62A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD62A Gene

Orthologs for SNORD62A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD62A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD62 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22192 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD62 35 35
  • 94 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD62 35
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD62 35
  • 84 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORD62 35
  • 65 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD62 35
  • 71 (a)
OneToMany
Species where no ortholog for SNORD62A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD62A Gene

ENSEMBL:
Gene Tree for SNORD62A (if available)
TreeFam:
Gene Tree for SNORD62A (if available)

Paralogs for SNORD62A Gene

No data available for Paralogs for SNORD62A Gene

Variants for SNORD62A Gene

Sequence variations from dbSNP and Humsavar for SNORD62A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10751480 -- 131,484,531(+) GAGCT(C/G)TAGGT intron-variant, upstream-variant-2KB
rs10793874 -- 131,484,628(+) GGTTT(G/T)GGCAA intron-variant, upstream-variant-2KB
rs10793875 -- 131,486,194(+) GCAGC(A/T)AGCCA intron-variant, downstream-variant-500B
rs10901062 -- 131,486,240(+) GCAGG(A/G)CGGAA intron-variant, downstream-variant-500B
rs113142352 -- 131,485,357(+) ACAGC(A/G)AGGCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD62A Gene

Variant ID Type Subtype PubMed ID
dgv1512e214 CNV gain 21293372
esv2759718 CNV gain 17122850
esv34928 CNV gain 17911159
esv3621887 CNV loss 21293372
nsv517936 CNV loss 19592680
nsv615563 CNV loss 21841781
nsv818728 CNV gain 17921354
nsv831740 CNV loss 17160897
nsv831741 CNV loss 17160897

Relevant External Links for SNORD62A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD62A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD62A Gene

Disorders for SNORD62A Gene

Relevant External Links for SNORD62A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD62A

No disorders were found for SNORD62A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD62A Gene

Publications for SNORD62A Gene

  1. A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. (PMID: 8962077) Tycowski K.T. … Steitz J.A. (Proc. Natl. Acad. Sci. U.S.A. 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD62A Gene

Sources for SNORD62A Gene

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