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Aliases for SNORD62A Gene

Subcategory (RNA class) for SNORD62A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD62A Gene

  • Small Nucleolar RNA, C/D Box 62A 2 3 5
  • RNA, U62 Small Nucleolar 2 3
  • RNU62 3
  • U62A 3
  • U62 3

External Ids for SNORD62A Gene

Previous HGNC Symbols for SNORD62A Gene

  • RNU62

Previous GeneCards Identifiers for SNORD62A Gene

  • GC09P133350
  • GC09P134362
  • GC09P103855
  • GC09P134377
  • GC09P134383
  • GC09P134388

Summaries for SNORD62A Gene

GeneCards Summary for SNORD62A Gene

SNORD62A (Small Nucleolar RNA, C/D Box 62A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD62A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD62A Gene

Genomics for SNORD62A Gene

Regulatory Elements for SNORD62A Gene

Enhancers for SNORD62A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H131401 1.6 Ensembl ENCODE dbSUPER 11.2 -79.6 -79588 9 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS POMT1 FAM78A ENSG00000176868 SNORD62A SNORD62B LOC105376301 PRRC2B UCK1 GC09M131403 PIR32430
GH09H131177 1.1 Ensembl ENCODE 10.8 -305.9 -305922 3 CTCF RB1 ZNF223 ZNF384 ZNF2 RAD21 ZFHX2 GATA3 SMC3 ZNF143 FAM78A PLPP7 PRRC2B SNORD62A SNORD62B RNU6-881P NUP214 GC09M131159 ENSG00000246851
GH09H131440 0.8 ENCODE dbSUPER 11.7 -44.1 -44115 1 MAZ POLR2A IKZF1 DPF2 PRDM4 IKZF2 SPI1 PRRC2B SNORD62A SNORD62B ENSG00000176868 POMT1 LOC105376301 ENSG00000246851 NUP214 PLPP7 PIR53214
GH09H131431 0.8 ENCODE dbSUPER 11.6 -52.4 -52393 2 JUND GLIS1 HLF CEBPB FOS RAD21 ZIC2 POMT1 PRRC2B SNORD62A SNORD62B ENSG00000176868 UCK1 PIR53214 PIR58994
GH09H131429 0.6 ENCODE 11.6 -56.0 -55953 1 SCRT1 GLIS1 SCRT2 ZNF600 ZNF398 ZIC2 PRDM1 PRRC2B SNORD62A SNORD62B POMT1 LOC105376301 ENSG00000176868 PIR53214 PIR58994
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD62A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD62A Gene

Chromosome:
9
Start:
131,485,665 bp from pter
End:
131,485,750 bp from pter
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD62A Gene

Genes around SNORD62A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD62A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD62A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD62A Gene

Proteins for SNORD62A Gene

Post-translational modifications for SNORD62A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD62A Gene

Domains & Families for SNORD62A Gene

Gene Families for SNORD62A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD62A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD62A Gene

Function for SNORD62A Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD62A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD62A Gene

Localization for SNORD62A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD62A Gene

Pathways & Interactions for SNORD62A Gene

SuperPathways for SNORD62A Gene

No Data Available

Interacting Proteins for SNORD62A Gene

Gene Ontology (GO) - Biological Process for SNORD62A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD62A Gene

Drugs & Compounds for SNORD62A Gene

No Compound Related Data Available

Transcripts for SNORD62A Gene

mRNA/cDNA for SNORD62A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD62A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD62A Gene

No ASD Table

Relevant External Links for SNORD62A Gene

GeneLoc Exon Structure for
SNORD62A
ECgene alternative splicing isoforms for
SNORD62A

Expression for SNORD62A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD62A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD62A Gene:

SNORD62A
genes like me logo Genes that share expression patterns with SNORD62A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD62A Gene

Orthologs for SNORD62A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD62A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD62 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22192 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD62 34 34
  • 94 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD62 34
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD62 34
  • 84 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORD62 34
  • 65 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD62 34
  • 71 (a)
OneToMany
Species where no ortholog for SNORD62A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD62A Gene

ENSEMBL:
Gene Tree for SNORD62A (if available)
TreeFam:
Gene Tree for SNORD62A (if available)

Paralogs for SNORD62A Gene

No data available for Paralogs for SNORD62A Gene

Variants for SNORD62A Gene

Sequence variations from dbSNP and Humsavar for SNORD62A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000481953 -- 131,485,537(+) TTACC(C/T)GGAAA intron-variant, upstream-variant-2KB
rs1000655806 -- 131,484,117(+) TCTGC(A/G)GTCTC intron-variant, upstream-variant-2KB
rs1000852673 -- 131,485,872(+) CGCTG(C/T)ACCCT intron-variant, downstream-variant-500B
rs1004699621 -- 131,485,443(+) CGCCT(C/T)GGCTG intron-variant, upstream-variant-2KB
rs1008598841 -- 131,484,269(+) TGGCA(A/G)GTGCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD62A Gene

Variant ID Type Subtype PubMed ID
dgv1512e214 CNV gain 21293372
esv2759718 CNV gain 17122850
esv34928 CNV gain 17911159
esv3621887 CNV loss 21293372
nsv517936 CNV loss 19592680
nsv615563 CNV loss 21841781
nsv818728 CNV gain 17921354
nsv831740 CNV loss 17160897
nsv831741 CNV loss 17160897

Relevant External Links for SNORD62A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD62A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD62A Gene

Disorders for SNORD62A Gene

Relevant External Links for SNORD62A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD62A

No disorders were found for SNORD62A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD62A Gene

Publications for SNORD62A Gene

  1. A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. (PMID: 8962077) Tycowski KT … Steitz JA (Proceedings of the National Academy of Sciences of the United States of America 1996) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD62A Gene

Sources for SNORD62A Gene

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