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Aliases for SNORD61 Gene

Subcategory (RNA class) for SNORD61 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD61 Gene

  • Small Nucleolar RNA, C/D Box 61 2 3 5
  • RNA, U61 Small Nuclear 2 3
  • HBII-342 3
  • RNU61 3
  • U61 3

External Ids for SNORD61 Gene

Previous HGNC Symbols for SNORD61 Gene

  • RNU61

Previous GeneCards Identifiers for SNORD61 Gene

  • GC0XM135789
  • GC0XM135961

Summaries for SNORD61 Gene

Entrez Gene Summary for SNORD61 Gene

  • Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box C/D class snoRNAs are involved in site-specific 2-prime-O-ribose methylation of preribosomal RNA precursors. This snoRNA is located in an intron of the RNA binding motif protein, X-linked gene (RBMX). [provided by RefSeq, Sep 2009]

GeneCards Summary for SNORD61 Gene

SNORD61 (Small Nucleolar RNA, C/D Box 61) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD61 Gene

Genomics for SNORD61 Gene

Regulatory Elements for SNORD61 Gene

Enhancers for SNORD61 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF136878 1.1 ENCODE 0.8 -0.9 -863 2.8 PKNOX1 ATF1 WRNIP1 ZFP64 ARID4B SIN3A GLI4 DMAP1 ZNF48 ZNF2 ARHGEF6 SRRM1P3 ENSG00000232611 GC0XM136880 GC0XM136881 SNORD61 RBMX
GH0XF136850 0.7 Ensembl 0.3 +28.6 28571 1.0 SOX13 GATAD2A CTCF SOX5 CEBPB CEBPG NR2F2 IRF9 ATF4 CEBPA ARHGEF6 ENSG00000232611 GC0XM136880 GC0XM136881 SNORD61
GH0XF136856 0.5 Ensembl 0.3 +22.7 22662 0.8 PBX2 IKZF1 NBN SPI1 ARHGEF6 ENSG00000232611 SNORD61 GC0XM136880 GC0XM136881
GH0XF136858 0.3 FANTOM5 0.3 +20.7 20678 0.2 HTATSF1 ENSG00000232611 SNORD61 GC0XM136880 GC0XM136881
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD61 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD61 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000261693 -629 3001 PKNOX1 ATF1 WRNIP1 ZFP64 ARID4B SIN3A GLI4 DMAP1 ZNF48 ZNF2

Genomic Location for SNORD61 Gene

Chromosome:
X
Start:
136,879,199 bp from pter
End:
136,879,271 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for SNORD61 Gene

Genes around SNORD61 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD61 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD61 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD61 Gene

Proteins for SNORD61 Gene

Post-translational modifications for SNORD61 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD61 Gene

Domains & Families for SNORD61 Gene

Gene Families for SNORD61 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD61: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD61 Gene

Function for SNORD61 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD61 Gene

Localization for SNORD61 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD61 Gene

Pathways & Interactions for SNORD61 Gene

SuperPathways for SNORD61 Gene

No Data Available

Interacting Proteins for SNORD61 Gene

Gene Ontology (GO) - Biological Process for SNORD61 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD61 Gene

Transcripts for SNORD61 Gene

mRNA/cDNA for SNORD61 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD61 Gene

No ASD Table

Relevant External Links for SNORD61 Gene

GeneLoc Exon Structure for
SNORD61
ECgene alternative splicing isoforms for
SNORD61

Expression for SNORD61 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD61 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD61 Gene:

SNORD61
genes like me logo Genes that share expression patterns with SNORD61: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD61 Gene

Orthologs for SNORD61 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD61 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORD61 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD61 35
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord61 35
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD61 35
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD61 35
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD61 35
  • 78 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD61 35
  • 70 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD61 35
  • 70 (a)
OneToMany
Species where no ortholog for SNORD61 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD61 Gene

ENSEMBL:
Gene Tree for SNORD61 (if available)
TreeFam:
Gene Tree for SNORD61 (if available)

Paralogs for SNORD61 Gene

No data available for Paralogs for SNORD61 Gene

Variants for SNORD61 Gene

Sequence variations from dbSNP and Humsavar for SNORD61 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs113098999 -- 136,879,903(+) CCCTA(C/T)TAAAT intron-variant, upstream-variant-2KB
rs113285566 -- 136,879,096(+) ATTTG(C/T)TGGTT nc-transcript-variant, downstream-variant-500B, reference, missense
rs113489215 -- 136,881,233(+) AAATA(C/G)ATGTA upstream-variant-2KB
rs113867260 -- 136,880,695(+) CGAAC(A/C)GCGAA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs11558426 -- 136,879,074(-) GCTTT(G/T)GTCAC nc-transcript-variant, downstream-variant-500B, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SNORD61 Gene

Variant ID Type Subtype PubMed ID
esv3574735 CNV loss 25503493

Relevant External Links for SNORD61 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD61

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD61 Gene

Disorders for SNORD61 Gene

Relevant External Links for SNORD61

Genetic Association Database (GAD)
SNORD61
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD61

No disorders were found for SNORD61 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD61 Gene

Publications for SNORD61 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3 64
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  3. Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. (PMID: 21347282) Lettre G. … Boerwinkle E. (PLoS Genet. 2011) 46 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD61 Gene

Sources for SNORD61 Gene

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