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Aliases for SNORD60 Gene

Subcategory (RNA class) for SNORD60 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD60 Gene

  • Small Nucleolar RNA, C/D Box 60 2 3 5
  • RNA, U60 Small Nuclear 2 3
  • RNU60 3
  • U60 3

External Ids for SNORD60 Gene

Previous HGNC Symbols for SNORD60 Gene

  • RNU60

Previous GeneCards Identifiers for SNORD60 Gene

  • GC16M002147
  • GC16M002131
  • GC16M002206
  • GC16M002208
  • GC16M002210
  • GC16M002212
  • GC16M002214
  • GC16M002218
  • GC16M002221

Summaries for SNORD60 Gene

GeneCards Summary for SNORD60 Gene

SNORD60 (Small Nucleolar RNA, C/D Box 60) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD60 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD60 Gene

Genomics for SNORD60 Gene

Regulatory Elements for SNORD60 Gene

Enhancers for SNORD60 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H001308 1.4 ENCODE dbSUPER 64.1 +844.4 844351 5.2 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 MCM3 NFYC WDR90 CRAMP1 ENSG00000261505 TELO2 UBE2I E4F1 TSC2 ENSG00000260051 JMJD8 RHOT2
GH16H003148 1.7 Ensembl ENCODE dbSUPER 30.3 -996.1 -996081 4.9 MLX ZFP64 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A MEF2D SSRP1 CREBBP E4F1 ZNF263 THOC6 ZNF597 ZNF213-AS1 SRRM2 ZNF205 AMDHD2 ENSG00000261938
GH16H001271 1.1 ENCODE 45.9 +883.3 883279 1.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 ZNF416 SP3 REST ZNF662 ZNF592 CRAMP1 WDR90 TELO2 IFT140 ENSG00000261505 TSC2 E4F1 WDR24 ENSG00000260646 UBE2I
GH16H003019 1.4 ENCODE dbSUPER 30.6 -867.2 -867198 5.2 MLX DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 ZC3H11A NFYC MEF2D ENSG00000261938 ZNF263 ZNF75A E4F1 TSC2 ERVK13-1 SRRM2 CREBBP ZNF597 SNHG19
GH16H002602 2.4 ENCODE dbSUPER 11.1 -448.5 -448512 1.7 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A PPARGC1A SSRP1 TBL3 ZNF597 AMDHD2 ENSG00000226890 SRRM2 ENSG00000200059 TIGD7 ZNF263 ENSG00000261240 ZNF598
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD60 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD60 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000279436 5 3401 HNRNPUL1 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1

Genomic Locations for SNORD60 Gene

Genomic Locations for SNORD60 Gene
chr16:2,155,023-2,155,105
(GRCh38/hg38)
Size:
83 bases
Orientation:
Minus strand
chr16:2,205,024-2,205,106
(GRCh37/hg19)

Genomic View for SNORD60 Gene

Genes around SNORD60 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD60 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD60 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD60 Gene

Proteins for SNORD60 Gene

Post-translational modifications for SNORD60 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD60 Gene

Domains & Families for SNORD60 Gene

Gene Families for SNORD60 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD60: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD60 Gene

Function for SNORD60 Gene

Phenotypes From GWAS Catalog for SNORD60 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD60 Gene

Localization for SNORD60 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD60 Gene

Pathways & Interactions for SNORD60 Gene

SuperPathways for SNORD60 Gene

No Data Available

Interacting Proteins for SNORD60 Gene

Gene Ontology (GO) - Biological Process for SNORD60 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD60 Gene

Drugs & Compounds for SNORD60 Gene

No Compound Related Data Available

Transcripts for SNORD60 Gene

mRNA/cDNA for SNORD60 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD60 Gene

No ASD Table

Relevant External Links for SNORD60 Gene

GeneLoc Exon Structure for
SNORD60
ECgene alternative splicing isoforms for
SNORD60

Expression for SNORD60 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD60 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD60 Gene:

SNORD60
genes like me logo Genes that share expression patterns with SNORD60: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD60 Gene

Orthologs for SNORD60 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD60 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD60 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD60 34
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD60 34
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23519 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD60 34
  • 68 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD60 34
  • 68 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD60 34
  • 65 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD60 34 34
  • 65 (a)
ManyToMany
Species where no ortholog for SNORD60 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD60 Gene

ENSEMBL:
Gene Tree for SNORD60 (if available)
TreeFam:
Gene Tree for SNORD60 (if available)

Paralogs for SNORD60 Gene

No data available for Paralogs for SNORD60 Gene

Variants for SNORD60 Gene

Sequence variations from dbSNP and Humsavar for SNORD60 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000505285 -- 2,155,626(+) GTGAT(C/T)CTGAA upstream-variant-2KB
rs1000598022 -- 2,155,808(+) AGGGG(G/T)CATCA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001589685 -- 2,154,707(+) CCGTT(C/T)TCATG downstream-variant-500B, upstream-variant-2KB
rs1002041677 -- 2,156,431(+) AGACA(A/G)GGTGG intron-variant, upstream-variant-2KB
rs1002143455 -- 2,156,619(+) AAAGA(A/G)CCAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD60 Gene

Variant ID Type Subtype PubMed ID
nsv952902 CNV deletion 24416366
nsv571190 CNV loss 21841781
nsv471072 CNV loss 18288195
nsv457349 CNV loss 19166990
nsv1052260 CNV gain 25217958
esv2422427 CNV duplication 17116639
dgv4863n54 CNV loss 21841781
dgv4861n54 CNV loss 21841781
dgv4859n54 CNV loss 21841781

Relevant External Links for SNORD60 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD60 Gene

Disorders for SNORD60 Gene

Relevant External Links for SNORD60

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD60

No disorders were found for SNORD60 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD60 Gene

Publications for SNORD60 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD60 Gene

Sources for SNORD60 Gene

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