Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD60 Gene

Subcategory (RNA class) for SNORD60 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD60 Gene

  • Small Nucleolar RNA, C/D Box 60 2 3
  • RNA, U60 Small Nuclear 2 3
  • RNU60 3
  • U60 3

External Ids for SNORD60 Gene

Previous HGNC Symbols for SNORD60 Gene

  • RNU60

Previous GeneCards Identifiers for SNORD60 Gene

  • GC16M002147
  • GC16M002131
  • GC16M002206
  • GC16M002208
  • GC16M002210
  • GC16M002212
  • GC16M002214
  • GC16M002218
  • GC16M002221

Summaries for SNORD60 Gene

GeneCards Summary for SNORD60 Gene

SNORD60 (Small Nucleolar RNA, C/D Box 60) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD60 Gene

Genomics for SNORD60 Gene

Regulatory Elements for SNORD60 Gene

Genomic Location for SNORD60 Gene

Start:
2,155,023 bp from pter
End:
2,155,105 bp from pter
Size:
83 bases
Orientation:
Minus strand

Genomic View for SNORD60 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD60 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD60 Gene

Proteins for SNORD60 Gene

Post-translational modifications for SNORD60 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD60 Gene

Domains for SNORD60 Gene

Gene Families for SNORD60 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD60: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD60 Gene

Function for SNORD60 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD60 Gene

Localization for SNORD60 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD60 Gene

Pathways for SNORD60 Gene

SuperPathways for SNORD60 Gene

No Data Available

Interacting Proteins for SNORD60 Gene

Gene Ontology (GO) - Biological Process for SNORD60 Gene

None

No data available for Pathways by source for SNORD60 Gene

Transcripts for SNORD60 Gene

mRNA/cDNA for SNORD60 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD60 Gene

No ASD Table

Relevant External Links for SNORD60 Gene

GeneLoc Exon Structure for
SNORD60
ECgene alternative splicing isoforms for
SNORD60

Expression for SNORD60 Gene

mRNA expression in normal human tissues for SNORD60 Gene

genes like me logo Genes that share expressions with SNORD60: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD60 Gene

Orthologs for SNORD60 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD60 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD60 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD60 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD60 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23519 36
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD60 36
  • 68 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD60 36
  • 68 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD60 36
  • 65 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD60 36
  • 65 (a)
ManyToMany
SNORD60 36
  • 68 (a)
ManyToMany
Species with no ortholog for SNORD60:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD60 Gene

ENSEMBL:
Gene Tree for SNORD60 (if available)
TreeFam:
Gene Tree for SNORD60 (if available)

Paralogs for SNORD60 Gene

No data available for Paralogs for SNORD60 Gene

Variants for SNORD60 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD60 Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
dgv2540n71 CNV Loss 21882294
dgv2544n71 CNV Loss 21882294
dgv2545n71 CNV Loss 21882294
dgv2546n71 CNV Loss 21882294
dgv2549n71 CNV Loss 21882294
dgv2550n71 CNV Loss 21882294
nsv471072 CNV Loss 18288195
dgv2556n71 CNV Loss 21882294
dgv2557n71 CNV Loss 21882294
nsv457349 CNV Loss 19166990
dgv2558n71 CNV Loss 21882294
dgv2562n71 CNV Loss 21882294
dgv2563n71 CNV Loss 21882294
nsv905127 CNV Loss 21882294
nsv905131 CNV Loss 21882294

Relevant External Links for SNORD60 Gene

HapMap Linkage Disequilibrium report
SNORD60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD60 Gene

Disorders for SNORD60 Gene

No disorders were found for SNORD60 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD60 Gene

Publications for SNORD60 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD60 Gene

Sources for SNORD60 Gene

Back to Top

Content