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Aliases for SNORD6 Gene

Subcategory (RNA class) for SNORD6 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD6 Gene

  • Small Nucleolar RNA, C/D Box 6 2 3
  • Mgh28S-2412 SnoRNA 3
  • Mgh28S-2412 3

External Ids for SNORD6 Gene

Previous GeneCards Identifiers for SNORD6 Gene

  • GC11M093146
  • GC11M093153
  • GC11M093159
  • GC11M093165
  • GC11M093171
  • GC11M093181
  • GC11M093192
  • GC11M093201
  • GC11M093465
  • GC11M093477
  • GC11M089541
  • GC11M093485
  • GC11M093501
  • GC11M093509
  • GC11M093517
  • GC11M093527
  • GC11M093538
  • GC11M093562

Summaries for SNORD6 Gene

GeneCards Summary for SNORD6 Gene

SNORD6 (Small Nucleolar RNA, C/D Box 6) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD6 Gene

Genomics for SNORD6 Gene

Regulatory Elements for SNORD6 Gene

Genomic Location for SNORD6 Gene

Start:
93,731,502 bp from pter
End:
93,731,574 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for SNORD6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD6 Gene

Proteins for SNORD6 Gene

Post-translational modifications for SNORD6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD6 Gene

Domains for SNORD6 Gene

Gene Families for SNORD6 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD6 Gene

Function for SNORD6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD6 Gene

Localization for SNORD6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD6 Gene

Pathways for SNORD6 Gene

SuperPathways for SNORD6 Gene

No Data Available

Interacting Proteins for SNORD6 Gene

Gene Ontology (GO) - Biological Process for SNORD6 Gene

None

No data available for Pathways by source for SNORD6 Gene

Transcripts for SNORD6 Gene

mRNA/cDNA for SNORD6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD6 Gene

No ASD Table

Relevant External Links for SNORD6 Gene

GeneLoc Exon Structure for
SNORD6
ECgene alternative splicing isoforms for
SNORD6

Expression for SNORD6 Gene

mRNA expression in normal human tissues for SNORD6 Gene

genes like me logo Genes that share expressions with SNORD6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD6 Gene

Orthologs for SNORD6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoZ40 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoZ40 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoZ40 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24357 36
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoZ40 36
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoZ40 36
  • 88 (a)
OneToMany
chicken
(Gallus gallus)
Aves snoZ40 36
  • 81 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia snoZ40 36
  • 83 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii snoZ40 36
  • 75 (a)
OneToMany
Species with no ortholog for SNORD6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD6 Gene

ENSEMBL:
Gene Tree for SNORD6 (if available)
TreeFam:
Gene Tree for SNORD6 (if available)

Paralogs for SNORD6 Gene

No data available for Paralogs for SNORD6 Gene

Variants for SNORD6 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD6 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
nsv832232 CNV Gain 17160897

Relevant External Links for SNORD6 Gene

HapMap Linkage Disequilibrium report
SNORD6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD6 Gene

Disorders for SNORD6 Gene

No disorders were found for SNORD6 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD6 Gene

Publications for SNORD6 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD6 Gene

Sources for SNORD6 Gene

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