Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD6 Gene

Subcategory (RNA class) for SNORD6 Gene


Quality Score for this RNA gene is


Aliases for SNORD6 Gene

  • Small Nucleolar RNA, C/D Box 6 2 3 5
  • Mgh28S-2412 SnoRNA 3
  • Mgh28S-2412 3

External Ids for SNORD6 Gene

Previous GeneCards Identifiers for SNORD6 Gene

  • GC11M093146
  • GC11M093153
  • GC11M093159
  • GC11M093165
  • GC11M093171
  • GC11M093181
  • GC11M093192
  • GC11M093201
  • GC11M093465
  • GC11M093477
  • GC11M089541
  • GC11M093485
  • GC11M093501
  • GC11M093509
  • GC11M093517
  • GC11M093527
  • GC11M093538
  • GC11M093562
  • GC11M093733
  • GC11M093744
  • GC11M093756
  • GC11M093766

Summaries for SNORD6 Gene

GeneCards Summary for SNORD6 Gene

SNORD6 (Small Nucleolar RNA, C/D Box 6) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD6 Gene

Genomics for SNORD6 Gene

Regulatory Elements for SNORD6 Gene

Enhancers for SNORD6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F093783 1.1 ENCODE 11.3 -53.2 -53157 2.6 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF548 DEK C11orf54 SNORA1 MED17 MRE11 ANKRD49 ENSG00000255233 ENSG00000233536 ENSG00000254874 SNORA40 SNORA18
GH11F093654 0.7 Ensembl ENCODE 10.1 +76.2 76174 1.6 GATA3 SCRT2 MAX C11orf54 MIR1304 TAF1D SNORA1 SNORA25 SNORA32 SNORD6 MED17 SNORA18 SNORA40
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD6 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD6 Gene

93,731,502 bp from pter
93,731,574 bp from pter
73 bases
Minus strand

Genomic View for SNORD6 Gene

Genes around SNORD6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD6 Gene

Proteins for SNORD6 Gene

Post-translational modifications for SNORD6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD6 Gene

Domains & Families for SNORD6 Gene

Gene Families for SNORD6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD6 Gene

Function for SNORD6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD6 Gene

Localization for SNORD6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD6 Gene

Pathways & Interactions for SNORD6 Gene

SuperPathways for SNORD6 Gene

No Data Available

Interacting Proteins for SNORD6 Gene

Gene Ontology (GO) - Biological Process for SNORD6 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD6 Gene

Transcripts for SNORD6 Gene

mRNA/cDNA for SNORD6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD6 Gene

No ASD Table

Relevant External Links for SNORD6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD6 Gene:

genes like me logo Genes that share expression patterns with SNORD6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD6 Gene

Orthologs for SNORD6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD6 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoZ40 35
  • 100 (a)
(Bos Taurus)
Mammalia snoZ40 35
  • 92 (a)
(Canis familiaris)
Mammalia snoZ40 35
  • 90 (a)
(Mus musculus)
Mammalia Gm24357 35
  • 89 (a)
(Monodelphis domestica)
Mammalia snoZ40 35
  • 88 (a)
(Ornithorhynchus anatinus)
Mammalia snoZ40 35
  • 88 (a)
(Gallus gallus)
Aves snoZ40 35
  • 81 (a)
(Anolis carolinensis)
Reptilia snoZ40 35
  • 83 (a)
(Danio rerio)
Actinopterygii snoZ40 35
  • 75 (a)
Species where no ortholog for SNORD6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD6 Gene

Gene Tree for SNORD6 (if available)
Gene Tree for SNORD6 (if available)

Paralogs for SNORD6 Gene

No data available for Paralogs for SNORD6 Gene

Variants for SNORD6 Gene

Sequence variations from dbSNP and Humsavar for SNORD6 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs113709416 -- 93,731,739(+) AAGTA(A/G)TGAAT downstream-variant-500B, upstream-variant-2KB
rs12421029 -- 93,733,446(+) CAACC(A/G/T)TCTTT downstream-variant-500B, upstream-variant-2KB
rs140306234 -- 93,732,843(+) TTTAC(A/G)TGACT downstream-variant-500B, upstream-variant-2KB
rs141771336 -- 93,731,426(+) GCTCT(A/G)TGATC downstream-variant-500B, upstream-variant-2KB
rs142588356 -- 93,732,562(+) TTTCA(C/T)AAACC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD6 Gene

Variant ID Type Subtype PubMed ID
nsv832232 CNV gain 17160897
esv3627294 CNV gain 21293372

Relevant External Links for SNORD6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD6 Gene

Disorders for SNORD6 Gene

Relevant External Links for SNORD6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD6 Gene

Publications for SNORD6 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD6 Gene

Sources for SNORD6 Gene

Loading form....