Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD59B Gene

Subcategory (RNA class) for SNORD59B Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD59B Gene

  • Small Nucleolar RNA, C/D Box 59B 2 3
  • U59B 3

External Ids for SNORD59B Gene

ORGUL Members for SNORD59B Gene

Previous GeneCards Identifiers for SNORD59B Gene

  • GC12U900560
  • GC12M055324
  • GC12M057037
  • GC12M054076

Summaries for SNORD59B Gene

GeneCards Summary for SNORD59B Gene

SNORD59B (Small Nucleolar RNA, C/D Box 59B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD59B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD59B Gene

Genomics for SNORD59B Gene

Regulatory Elements for SNORD59B Gene

Enhancers for SNORD59B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H056718 1.4 ENCODE dbSUPER 11 -78.8 -78805 8.9 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZNF610 GLIS1 NBN BAZ2A NEMP1 ZC3H10 DNAJC14 ENSG00000258317 SMARCC2 ANKRD52 STAT2 PRIM1 ATP5B
GH12H056748 1.3 Ensembl ENCODE 10.6 -107.2 -107206 4.1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 SP3 MXD4 REST BAZ2A NEMP1 ATP5B MBD6 RN7SL809P TMEM198B RNU6-343P DNAJC14 CDK2 ZC3H10
GH12H056564 1.2 Ensembl ENCODE 9.9 +75.5 75545 7.7 HDAC1 ELF3 ARID4B BATF RFX5 RARA SCRT2 ATF7 RUNX3 IKZF2 RBMS2 GLS2 BAZ2A SPRYD4 APOF ATP5B SNORD59A SNORD59B NACA GC12P056589
GH12H056695 1 ENCODE dbSUPER 11.7 -52.0 -51989 1.2 HDGF TAL1 ZBTB40 FOSL1 ZNF766 MTA3 ZBTB20 SMARCE1 L3MBTL2 DPF2 BAZ2A ATP5B SNORD59A SNORD59B NACA PTGES3
GH12H056580 0.8 ENCODE 10 +61.7 61676 2.5 KLF1 JUN BATF FOSL1 TCF12 EGR1 NCOR1 EED NR2F6 RUNX3 RBMS2 GLS2 BAZ2A ATP5B SNORD59A SNORD59B NEMP1 GC12P056589
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD59B on UCSC Golden Path with GeneCards custom track

Promoters for SNORD59B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000052537 -1946 1801 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1

Genomic Locations for SNORD59B Gene

Genomic Locations for SNORD59B Gene
chr12:56,643,680-56,643,754
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr12:57,037,464-57,037,538
(GRCh37/hg19)

Genomic View for SNORD59B Gene

Genes around SNORD59B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD59B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD59B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD59B Gene

Proteins for SNORD59B Gene

Post-translational modifications for SNORD59B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD59B Gene

Domains & Families for SNORD59B Gene

Gene Families for SNORD59B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD59B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD59B Gene

Function for SNORD59B Gene

Phenotypes From GWAS Catalog for SNORD59B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD59B Gene

Localization for SNORD59B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD59B Gene

Pathways & Interactions for SNORD59B Gene

SuperPathways for SNORD59B Gene

No Data Available

Interacting Proteins for SNORD59B Gene

Gene Ontology (GO) - Biological Process for SNORD59B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD59B Gene

Drugs & Compounds for SNORD59B Gene

No Compound Related Data Available

Transcripts for SNORD59B Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD59B Gene

No ASD Table

Relevant External Links for SNORD59B Gene

GeneLoc Exon Structure for
SNORD59B
ECgene alternative splicing isoforms for
SNORD59B

No data available for mRNA/cDNA for SNORD59B Gene

Expression for SNORD59B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD59B Gene:

SNORD59B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD59B Gene

Orthologs for SNORD59B Gene

No data available for Orthologs and Evolution for SNORD59B Gene

Paralogs for SNORD59B Gene

No data available for Paralogs for SNORD59B Gene

Variants for SNORD59B Gene

Sequence variations from dbSNP and Humsavar for SNORD59B Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1002863394 -- 56,644,127(+) TAACC(C/T)AACTT intron-variant, upstream-variant-2KB
rs1005397457 -- 56,644,413(+) CGAGA(C/T)CAGCC intron-variant, upstream-variant-2KB
rs1005741224 -- 56,645,723(+) CGCGG(C/T)TCCAG intron-variant, upstream-variant-2KB
rs1005819048 -- 56,645,531(+) ACAGC(C/G)TTCCC intron-variant, upstream-variant-2KB
rs1006965729 -- 56,645,437(+) GAGAG(A/G)AAAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD59B Gene

Variant ID Type Subtype PubMed ID
nsv482992 CNV gain+loss 15286789

Relevant External Links for SNORD59B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD59B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD59B Gene

Disorders for SNORD59B Gene

Relevant External Links for SNORD59B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD59B

No disorders were found for SNORD59B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD59B Gene

Publications for SNORD59B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD59B Gene

Sources for SNORD59B Gene

Content
Loading form....