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Aliases for SNORD59B Gene

Subcategory (RNA class) for SNORD59B Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD59B Gene

  • Small Nucleolar RNA, C/D Box 59B 2 3
  • U59B 3

External Ids for SNORD59B Gene

ORGUL Members for SNORD59B Gene

Previous GeneCards Identifiers for SNORD59B Gene

  • GC12U900560
  • GC12M055324
  • GC12M057037
  • GC12M054076

Summaries for SNORD59B Gene

GeneCards Summary for SNORD59B Gene

SNORD59B (Small Nucleolar RNA, C/D Box 59B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD59B Gene

Genomics for SNORD59B Gene

Regulatory Elements for SNORD59B Gene

Enhancers for SNORD59B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F056718 1.2 ENCODE 11 -78.8 -78805 8.9 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ZNF263 MCM3 NEMP1 BAZ2A ANKRD52 RN7SL809P ENSG00000224713 TMEM198B ZC3H10 RNU6-343P CDK2 SMARCC2
GH12F056564 1.2 Ensembl ENCODE 9.9 +75.5 75480 7.9 HDGF ELF3 HDAC1 ARID4B ZNF48 RAD21 RARA SCRT2 CEBPB PPARG RBMS2 GLS2 BAZ2A SPRYD4 APOF ATP5B SNORD59A SNORD59B NACA GC12P056589
GH12F056695 1 ENCODE 11.7 -52.0 -51989 1.2 HDGF ATF1 SIN3A FEZF1 DMAP1 ZNF48 YY1 GLIS2 KLF13 KDM4B BAZ2A ZC3H10 RN7SL809P NACA CDK2 NEMP1 TMEM198B RNU6-343P ATP5B SNORD59A
GH12F056748 1.1 ENCODE 10.6 -107.2 -107206 4.1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 SP3 MXD4 BAZ2A RNU6-343P CDK2 RBMS2 LOC100131294 NEMP1 ATP5B RN7SL809P TMEM198B RPL41
GH12F056580 1 Ensembl ENCODE 10 +61.7 61676 2.5 KLF1 TEAD4 JUN NCOR1 EED NR2F6 MAFK SMARCE1 NR2F1 CEBPB RBMS2 GLS2 BAZ2A SNORD59A SNORD59B ATP5B NEMP1 GC12P056589
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD59B on UCSC Golden Path with GeneCards custom track

Promoters for SNORD59B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000431281 -1946 2201 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143

Genomic Location for SNORD59B Gene

Chromosome:
12
Start:
56,643,680 bp from pter
End:
56,643,754 bp from pter
Size:
75 bases
Orientation:
Minus strand

Genomic View for SNORD59B Gene

Genes around SNORD59B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD59B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD59B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD59B Gene

Proteins for SNORD59B Gene

Post-translational modifications for SNORD59B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD59B Gene

Domains & Families for SNORD59B Gene

Gene Families for SNORD59B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD59B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD59B Gene

Function for SNORD59B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD59B Gene

Localization for SNORD59B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD59B Gene

Pathways & Interactions for SNORD59B Gene

SuperPathways for SNORD59B Gene

No Data Available

Interacting Proteins for SNORD59B Gene

Gene Ontology (GO) - Biological Process for SNORD59B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD59B Gene

Transcripts for SNORD59B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD59B Gene

No ASD Table

Relevant External Links for SNORD59B Gene

GeneLoc Exon Structure for
SNORD59B
ECgene alternative splicing isoforms for
SNORD59B

No data available for mRNA/cDNA for SNORD59B Gene

Expression for SNORD59B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD59B Gene:

SNORD59B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD59B Gene

Orthologs for SNORD59B Gene

No data available for Orthologs and Evolution for SNORD59B Gene

Paralogs for SNORD59B Gene

No data available for Paralogs for SNORD59B Gene

Variants for SNORD59B Gene

Sequence variations from dbSNP and Humsavar for SNORD59B Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10716881 -- 56,644,387(+) GGGGA(-/A)TCACC intron-variant, upstream-variant-2KB
rs111832585 -- 56,645,542(+) ATCCG(C/G)ATGCA intron-variant, upstream-variant-2KB
rs111859413 -- 56,643,835(+) AACAT(A/C)CCAAT upstream-variant-2KB, splice-donor-variant
rs113846162 -- 56,643,514(+) CCACC(A/G)TGGGC downstream-variant-500B, reference, synonymous-codon
rs114224313 -- 56,643,723(+) AGAAC(A/G)AAAGT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD59B Gene

Variant ID Type Subtype PubMed ID
nsv482992 CNV gain+loss 15286789

Relevant External Links for SNORD59B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD59B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD59B Gene

Disorders for SNORD59B Gene

Relevant External Links for SNORD59B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD59B

No disorders were found for SNORD59B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD59B Gene

Publications for SNORD59B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD59B Gene

Sources for SNORD59B Gene

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