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Aliases for SNORD59B Gene

Subcategory (RNA class) for SNORD59B Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD59B Gene

  • Small Nucleolar RNA, C/D Box 59B 2 3
  • U59B 3

External Ids for SNORD59B Gene

ORGUL Members for SNORD59B Gene

Previous GeneCards Identifiers for SNORD59B Gene

  • GC12U900560
  • GC12M055324
  • GC12M057037
  • GC12M054076

Summaries for SNORD59B Gene

GeneCards Summary for SNORD59B Gene

SNORD59B (Small Nucleolar RNA, C/D Box 59B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD59B Gene

Genomics for SNORD59B Gene

Regulatory Elements for SNORD59B Gene

Enhancers for SNORD59B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G056718 1.5 ENCODE dbSUPER 11 -78.8 -78805 8.9 CREB3L1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ZNF263 MCM3 NEMP1 SMARCC2 BAZ2A ENSG00000257740 ANKRD52 TMEM198B ENSG00000224713 NAB2 RN7SL809P STAT2
GH12G056695 1.3 ENCODE dbSUPER 11.7 -52.0 -51989 1.2 HNRNPUL1 HDGF ATF1 SIN3A DMAP1 FEZF1 ZNF48 YY1 ZNF766 GLIS2 BAZ2A NEMP1 RN7SL809P TMEM198B RNU6-343P CDK2 ZC3H10 ATP5B SNORD59B SNORD59A
GH12G056748 1.4 Ensembl ENCODE 10.6 -107.2 -107206 4.1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 FOS SP3 BAZ2A NEMP1 ATP5B RN7SL809P TMEM198B RNU6-343P CDK2 ZC3H10 SNORD59A SNORD59B
GH12G056564 1.2 Ensembl ENCODE 9.9 +75.5 75545 7.7 ELF3 HDAC1 ARID4B RAD21 ZNF48 RARA SCRT2 FOS IKZF2 CEBPB RBMS2 GLS2 BAZ2A SPRYD4 APOF SNORD59B SNORD59A ATP5B NACA GC12P056589
GH12G056580 0.8 ENCODE 10 +61.7 61676 2.5 KLF1 TEAD4 JUN FOSL1 TCF12 GATA2 EGR1 NCOR1 EED NR2F6 RBMS2 GLS2 BAZ2A SNORD59A ATP5B SNORD59B NEMP1 GC12P056589
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD59B on UCSC Golden Path with GeneCards custom track

Promoters for SNORD59B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000052537 -1946 1801 HDGF FOXA2 PKNOX1 CREB3L1 ARNT WRNIP1 ZFP64 ARID4B SIN3A DMAP1

Genomic Location for SNORD59B Gene

Chromosome:
12
Start:
56,643,680 bp from pter
End:
56,643,754 bp from pter
Size:
75 bases
Orientation:
Minus strand

Genomic View for SNORD59B Gene

Genes around SNORD59B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD59B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD59B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD59B Gene

Proteins for SNORD59B Gene

Post-translational modifications for SNORD59B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD59B Gene

Domains & Families for SNORD59B Gene

Gene Families for SNORD59B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD59B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD59B Gene

Function for SNORD59B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD59B Gene

Localization for SNORD59B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD59B Gene

Pathways & Interactions for SNORD59B Gene

SuperPathways for SNORD59B Gene

No Data Available

Interacting Proteins for SNORD59B Gene

Gene Ontology (GO) - Biological Process for SNORD59B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD59B Gene

Drugs & Compounds for SNORD59B Gene

No Compound Related Data Available

Transcripts for SNORD59B Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD59B Gene

No ASD Table

Relevant External Links for SNORD59B Gene

GeneLoc Exon Structure for
SNORD59B
ECgene alternative splicing isoforms for
SNORD59B

No data available for mRNA/cDNA for SNORD59B Gene

Expression for SNORD59B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD59B Gene:

SNORD59B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD59B Gene

Orthologs for SNORD59B Gene

No data available for Orthologs and Evolution for SNORD59B Gene

Paralogs for SNORD59B Gene

No data available for Paralogs for SNORD59B Gene

Variants for SNORD59B Gene

Sequence variations from dbSNP and Humsavar for SNORD59B Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1002863394 -- 56,644,127(+) TAACC(C/T)AACTT intron-variant, upstream-variant-2KB
rs1005397457 -- 56,644,413(+) CGAGA(C/T)CAGCC intron-variant, upstream-variant-2KB
rs1005741224 -- 56,645,723(+) CGCGG(C/T)TCCAG intron-variant, upstream-variant-2KB
rs1005819048 -- 56,645,531(+) ACAGC(C/G)TTCCC intron-variant, upstream-variant-2KB
rs1006965729 -- 56,645,437(+) GAGAG(A/G)AAAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD59B Gene

Variant ID Type Subtype PubMed ID
nsv482992 CNV gain+loss 15286789

Relevant External Links for SNORD59B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD59B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD59B Gene

Disorders for SNORD59B Gene

Relevant External Links for SNORD59B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD59B

No disorders were found for SNORD59B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD59B Gene

Publications for SNORD59B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD59B Gene

Sources for SNORD59B Gene

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