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Aliases for SNORD59B Gene

Subcategory (RNA class) for SNORD59B Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD59B Gene

  • Small Nucleolar RNA, C/D Box 59B 2 3
  • U59B 3

External Ids for SNORD59B Gene

ORGUL Members for SNORD59B Gene

Previous GeneCards Identifiers for SNORD59B Gene

  • GC12U900560
  • GC12M055324
  • GC12M057037
  • GC12M054076

Summaries for SNORD59B Gene

GeneCards Summary for SNORD59B Gene

SNORD59B (Small Nucleolar RNA, C/D Box 59B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD59B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD59B Gene

Genomics for SNORD59B Gene

GeneHancer (GH) Regulatory Elements for SNORD59B Gene

Promoters and enhancers for SNORD59B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I056644 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -2.0 -1977 2.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ATP5F1B GC12M056644 GC12M056646 GC12M056647 SNORD59A SNORD59B BAZ2A DNAJC14 ZC3H10 NEMP1
GH12I056718 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11 -78.8 -78804 8.9 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC NACA BAZ2A ANKRD52 NEMP1 IKZF4 ENSG00000257740 DNAJC14 SMARCC2 STAT2 PRIM1
GH12I056748 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 10.6 -107.2 -107205 4.1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF213 E2F8 ZNF143 PRIM1 HSD17B6 BAZ2A MBD6 NEMP1 RN7SL809P CDK2 ZC3H10 TMEM198B DNAJC14
GH12I056564 Enhancer 1.1 Ensembl ENCODE 9.9 +75.5 75545 7.7 ARID4B ZNF48 ATF7 RUNX3 REST PPARG KAT8 GLIS1 ETV4 CTCF RBMS2 GLS2 BAZ2A SPRYD4 APOF SNORD59A SNORD59B ATP5F1B NACA GC12P056589
GH12I056695 Enhancer 0.9 ENCODE dbSUPER 11.7 -52.0 -51988 1.2 HDGF PYGO2 ZBTB40 FOSL1 ZNF766 MTA3 BRD9 ARID2 ZBTB20 SMARCE1 BAZ2A ATP5F1B SNORD59A SNORD59B NACA PTGES3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD59B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD59B gene promoter:

Genomic Locations for SNORD59B Gene

Genomic Locations for SNORD59B Gene
chr12:56,643,680-56,643,754
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr12:57,037,464-57,037,538
(GRCh37/hg19)

Genomic View for SNORD59B Gene

Genes around SNORD59B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD59B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD59B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD59B Gene

Proteins for SNORD59B Gene

Post-translational modifications for SNORD59B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD59B Gene

Domains & Families for SNORD59B Gene

Gene Families for SNORD59B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD59B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD59B Gene

Function for SNORD59B Gene

Phenotypes From GWAS Catalog for SNORD59B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD59B Gene

Localization for SNORD59B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD59B Gene

Pathways & Interactions for SNORD59B Gene

SuperPathways for SNORD59B Gene

No Data Available

Interacting Proteins for SNORD59B Gene

Gene Ontology (GO) - Biological Process for SNORD59B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD59B Gene

Drugs & Compounds for SNORD59B Gene

No Compound Related Data Available

Transcripts for SNORD59B Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD59B Gene

No ASD Table

Relevant External Links for SNORD59B Gene

GeneLoc Exon Structure for
SNORD59B
ECgene alternative splicing isoforms for
SNORD59B

No data available for mRNA/cDNA for SNORD59B Gene

Expression for SNORD59B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD59B Gene:

SNORD59B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD59B Gene

Orthologs for SNORD59B Gene

No data available for Orthologs and Evolution for SNORD59B Gene

Paralogs for SNORD59B Gene

No data available for Paralogs for SNORD59B Gene

Variants for SNORD59B Gene

Sequence variations from dbSNP and Humsavar for SNORD59B Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1002863394 -- 56,644,127(-) C/T upstream_transcript_variant
rs1005397457 -- 56,644,413(-) C/T upstream_transcript_variant
rs1005741224 -- 56,645,723(-) C/T upstream_transcript_variant
rs1005819048 -- 56,645,531(-) C/G upstream_transcript_variant
rs1006965729 -- 56,645,437(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD59B Gene

Variant ID Type Subtype PubMed ID
nsv482992 CNV gain+loss 15286789

Additional Variant Information for SNORD59B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD59B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD59B Gene

Disorders for SNORD59B Gene

Additional Disease Information for SNORD59B

No disorders were found for SNORD59B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD59B Gene

Publications for SNORD59B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD59B Gene

Sources for SNORD59B Gene

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