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Aliases for SNORD58C Gene

Subcategory (RNA class) for SNORD58C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD58C Gene

  • Small Nucleolar RNA, C/D Box 58C 2 3
  • U58 Small Nucleolar RNA 3
  • SNORD58C SnoRNA 3
  • U58 SnoRNA 3
  • U58 3

External Ids for SNORD58C Gene

ORGUL Members for SNORD58C Gene

Previous GeneCards Identifiers for SNORD58C Gene

  • GC18U900345
  • GC18M045312
  • GC18M047015
  • GC18M043869

Summaries for SNORD58C Gene

GeneCards Summary for SNORD58C Gene

SNORD58C (Small Nucleolar RNA, C/D Box 58C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58C Gene

Genomics for SNORD58C Gene

Regulatory Elements for SNORD58C Gene

Genomic Location for SNORD58C Gene

Start:
49,489,235 bp from pter
End:
49,489,324 bp from pter
Size:
90 bases
Orientation:
Minus strand

Genomic View for SNORD58C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD58C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58C Gene

Proteins for SNORD58C Gene

Post-translational modifications for SNORD58C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58C Gene

Domains for SNORD58C Gene

Gene Families for SNORD58C Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD58C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD58C Gene

Function for SNORD58C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD58C Gene

Localization for SNORD58C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD58C Gene

Pathways for SNORD58C Gene

SuperPathways for SNORD58C Gene

No Data Available

Interacting Proteins for SNORD58C Gene

Gene Ontology (GO) - Biological Process for SNORD58C Gene

None

No data available for Pathways by source for SNORD58C Gene

Transcripts for SNORD58C Gene

mRNA/cDNA for SNORD58C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58C Gene

No ASD Table

Relevant External Links for SNORD58C Gene

GeneLoc Exon Structure for
SNORD58C
ECgene alternative splicing isoforms for
SNORD58C

Expression for SNORD58C Gene

mRNA expression in normal human tissues for SNORD58C Gene

genes like me logo Genes that share expressions with SNORD58C: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNORD58C Gene

Orthologs for SNORD58C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58C Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORD58 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD58 36
  • 86 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD58 36
  • 74 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD58 36
  • 82 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORD58 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD58 36
  • 75 (a)
OneToMany
SNORD58 36
  • 78 (a)
OneToMany
SNORD58 36
  • 75 (a)
OneToMany
SNORD58 36
  • 78 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD58 36
  • 72 (a)
OneToOne
Species with no ortholog for SNORD58C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD58C Gene

ENSEMBL:
Gene Tree for SNORD58C (if available)
TreeFam:
Gene Tree for SNORD58C (if available)

Paralogs for SNORD58C Gene

No data available for Paralogs for SNORD58C Gene

Variants for SNORD58C Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD58C Gene

Variant ID Type Subtype PubMed ID
nsv2294 CNV Loss 18451855

Relevant External Links for SNORD58C Gene

HapMap Linkage Disequilibrium report
SNORD58C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD58C Gene

Disorders for SNORD58C Gene

No disorders were found for SNORD58C Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNORD58C Gene

Publications for SNORD58C Gene

  1. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 3
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD58C Gene

Sources for SNORD58C Gene

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