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Aliases for SNORD58C Gene

Subcategory (RNA class) for SNORD58C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD58C Gene

  • Small Nucleolar RNA, C/D Box 58C 2 3 5
  • U58 Small Nucleolar RNA 3
  • SNORD58C SnoRNA 3
  • U58 SnoRNA 3
  • U58 3

External Ids for SNORD58C Gene

ORGUL Members for SNORD58C Gene

Previous GeneCards Identifiers for SNORD58C Gene

  • GC18U900345
  • GC18M045312
  • GC18M047015
  • GC18M043869

Summaries for SNORD58C Gene

GeneCards Summary for SNORD58C Gene

SNORD58C (Small Nucleolar RNA, C/D Box 58C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD58C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58C Gene

Genomics for SNORD58C Gene

GeneHancer (GH) Regulatory Elements for SNORD58C Gene

Promoters and enhancers for SNORD58C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I049485 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -0.5 -542 8.4 MLX FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC ZFP41 SSRP1 C18orf32 GC18M049490 GC18M049512 GC18M049513 GC18M049514 GC18M049515 GC18M049516 GC18M049517 GC18M049518 PIR54855
GH18I049520 Enhancer 0.8 ENCODE 11.1 -31.9 -31927 0.9 ZSCAN4 INSM2 KLF17 FEZF1 ZEB1 ZNF335 GLIS2 ZNF366 ZNF416 EGR2 MBD1 LIPG RPL17-C18orf32 SNORD58A SNORD58C DYM C18orf32 LOC101928144 GC18M049549
GH18I049465 Enhancer 0.7 ENCODE 11.2 +23.8 23829 0.7 CTCF SIN3A FEZF1 ZIC2 ZNF664 ZNF335 ZNF143 ZNF600 ZNF189 ZFP37 SNORD58C RPL17-C18orf32 SNORD58A DYM PRR13P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD58C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD58C gene promoter:

Genomic Locations for SNORD58C Gene

Genomic Locations for SNORD58C Gene
chr18:49,489,235-49,489,324
(GRCh38/hg38)
Size:
90 bases
Orientation:
Minus strand
chr18:47,015,605-47,015,694
(GRCh37/hg19)

Genomic View for SNORD58C Gene

Genes around SNORD58C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD58C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD58C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58C Gene

Proteins for SNORD58C Gene

Post-translational modifications for SNORD58C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58C Gene

Domains & Families for SNORD58C Gene

Gene Families for SNORD58C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD58C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD58C Gene

Function for SNORD58C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD58C Gene

Localization for SNORD58C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD58C Gene

Pathways & Interactions for SNORD58C Gene

SuperPathways for SNORD58C Gene

No Data Available

Interacting Proteins for SNORD58C Gene

Gene Ontology (GO) - Biological Process for SNORD58C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD58C Gene

Drugs & Compounds for SNORD58C Gene

No Compound Related Data Available

Transcripts for SNORD58C Gene

mRNA/cDNA for SNORD58C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58C Gene

No ASD Table

Relevant External Links for SNORD58C Gene

GeneLoc Exon Structure for
SNORD58C
ECgene alternative splicing isoforms for
SNORD58C

Expression for SNORD58C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD58C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD58C Gene:

SNORD58C
genes like me logo Genes that share expression patterns with SNORD58C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD58C Gene

Orthologs for SNORD58C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD58 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD58 34
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD58 34
  • 86 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD58 34
  • 82 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD58 34
  • 74 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD58 34 34 34 34
  • 75 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD58 34
  • 72 (a)
OneToOne
Species where no ortholog for SNORD58C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD58C Gene

ENSEMBL:
Gene Tree for SNORD58C (if available)
TreeFam:
Gene Tree for SNORD58C (if available)

Paralogs for SNORD58C Gene

No data available for Paralogs for SNORD58C Gene

Variants for SNORD58C Gene

Sequence variations from dbSNP and Humsavar for SNORD58C Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1003669680 -- 49,491,177(-) A/G upstream_transcript_variant
rs1004393866 -- 49,491,018(-) T/C upstream_transcript_variant
rs1004788738 -- 49,490,658(-) A/G upstream_transcript_variant
rs1005177032 -- 49,488,949(-) A/G downstream_transcript_variant
rs1011133686 -- 49,491,220(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD58C Gene

Variant ID Type Subtype PubMed ID
nsv1065279 CNV gain 25217958
nsv2294 CNV deletion 18451855
nsv978629 CNV duplication 23825009

Additional Variant Information for SNORD58C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD58C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD58C Gene

Disorders for SNORD58C Gene

Additional Disease Information for SNORD58C

No disorders were found for SNORD58C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD58C Gene

Publications for SNORD58C Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58
  3. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 58

Products for SNORD58C Gene

Sources for SNORD58C Gene

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