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Aliases for SNORD58C Gene

Subcategory (RNA class) for SNORD58C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD58C Gene

  • Small Nucleolar RNA, C/D Box 58C 2 3 5
  • U58 Small Nucleolar RNA 3
  • SNORD58C SnoRNA 3
  • U58 SnoRNA 3
  • U58 3

External Ids for SNORD58C Gene

ORGUL Members for SNORD58C Gene

Previous GeneCards Identifiers for SNORD58C Gene

  • GC18U900345
  • GC18M045312
  • GC18M047015
  • GC18M043869

Summaries for SNORD58C Gene

GeneCards Summary for SNORD58C Gene

SNORD58C (Small Nucleolar RNA, C/D Box 58C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58C Gene

Genomics for SNORD58C Gene

Regulatory Elements for SNORD58C Gene

Enhancers for SNORD58C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G049520 0.9 ENCODE 11.1 -31.9 -31928 0.9 ZSCAN4 INSM2 KLF17 FEZF1 ZEB1 GLIS2 ZNF366 ZNF416 EGR2 ZNF362 LIPG RPL17-C18orf32 SNORD58A SNORD58C DYM C18orf32 LOC101928144 GC18M049549
GH18G049465 0.7 ENCODE 11.2 +23.8 23829 0.7 TEAD4 ZFP37 FEZF1 ZNF501 ZIC2 OSR2 ZNF664 HDAC2 GLIS1 ZNF24 SNORD58C RPL17-C18orf32 SNORD58A DYM PRR13P4
GH18G049485 1.2 ENCODE 0.7 -0.5 -542 8.4 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC DYM C18orf32 RPL17 ACAA2 ENSG00000252139 SCARNA17 LIPG MIR1539 GC18M049490 GC18M049509
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD58C on UCSC Golden Path with GeneCards custom track

Promoters for SNORD58C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000103216 523 1601 PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766

Genomic Location for SNORD58C Gene

Chromosome:
18
Start:
49,489,235 bp from pter
End:
49,489,324 bp from pter
Size:
90 bases
Orientation:
Minus strand

Genomic View for SNORD58C Gene

Genes around SNORD58C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD58C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD58C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58C Gene

Proteins for SNORD58C Gene

Post-translational modifications for SNORD58C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58C Gene

Domains & Families for SNORD58C Gene

Gene Families for SNORD58C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD58C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD58C Gene

Function for SNORD58C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD58C Gene

Localization for SNORD58C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD58C Gene

Pathways & Interactions for SNORD58C Gene

SuperPathways for SNORD58C Gene

No Data Available

Interacting Proteins for SNORD58C Gene

Gene Ontology (GO) - Biological Process for SNORD58C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD58C Gene

Drugs & Compounds for SNORD58C Gene

No Compound Related Data Available

Transcripts for SNORD58C Gene

mRNA/cDNA for SNORD58C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58C Gene

No ASD Table

Relevant External Links for SNORD58C Gene

GeneLoc Exon Structure for
SNORD58C
ECgene alternative splicing isoforms for
SNORD58C

Expression for SNORD58C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD58C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD58C Gene:

SNORD58C
genes like me logo Genes that share expression patterns with SNORD58C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD58C Gene

Orthologs for SNORD58C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD58 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD58 35
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD58 35
  • 86 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD58 35
  • 82 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD58 35
  • 74 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD58 35 35 35 35
  • 75 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD58 35
  • 72 (a)
OneToOne
Species where no ortholog for SNORD58C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD58C Gene

ENSEMBL:
Gene Tree for SNORD58C (if available)
TreeFam:
Gene Tree for SNORD58C (if available)

Paralogs for SNORD58C Gene

No data available for Paralogs for SNORD58C Gene

Variants for SNORD58C Gene

Sequence variations from dbSNP and Humsavar for SNORD58C Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1003669680 -- 49,491,177(+) GCCCC(A/G)TCTTG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004393866 -- 49,491,018(+) CAAAA(C/T)GTCGA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004788738 -- 49,490,658(+) ATTTC(A/G)CCATC intron-variant, upstream-variant-2KB
rs1005177032 -- 49,488,949(+) GCTGG(A/G)GTGCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1011133686 -- 49,491,220(+) GTACT(A/G)CTTCT intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD58C Gene

Variant ID Type Subtype PubMed ID
nsv1065279 CNV gain 25217958
nsv2294 CNV deletion 18451855
nsv978629 CNV duplication 23825009

Relevant External Links for SNORD58C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD58C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD58C Gene

Disorders for SNORD58C Gene

Relevant External Links for SNORD58C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD58C

No disorders were found for SNORD58C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD58C Gene

Publications for SNORD58C Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64
  3. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 3 64

Products for SNORD58C Gene

Sources for SNORD58C Gene

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