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Aliases for SNORD58B Gene

Subcategory (RNA class) for SNORD58B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD58B Gene

  • Small Nucleolar RNA, C/D Box 58B 2 3
  • RNA, U58B Small Nuclear 2 3
  • RNU58B 3
  • U58b 3

External Ids for SNORD58B Gene

ORGUL Members for SNORD58B Gene

Previous Symbols for SNORD58B Gene

  • RNU58B

Summaries for SNORD58B Gene

GeneCards Summary for SNORD58B Gene

SNORD58B (Small Nucleolar RNA, C/D Box 58B) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58B Gene

Genomics for SNORD58B Gene

Genomic Location for SNORD58B Gene

Start:
49,491,664 bp from pter
End:
49,491,729 bp from pter
Size:
66 bases
Orientation:
Minus strand

Genomic View for SNORD58B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD58B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58B Gene

Regulatory Elements for SNORD58B Gene

Proteins for SNORD58B Gene

Post-translational modifications for SNORD58B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58B Gene

Domains for SNORD58B Gene

Gene Families for SNORD58B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORD58B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORD58B Gene

Function for SNORD58B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD58B Gene

Localization for SNORD58B Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORD58B Gene

Pathways for SNORD58B Gene

SuperPathways for SNORD58B Gene

No Data Available

Interacting Proteins for SNORD58B Gene

Gene Ontology (GO) - Biological Process for SNORD58B Gene

None

No data available for Pathways by source for SNORD58B Gene

Transcripts for SNORD58B Gene

mRNA/cDNA for SNORD58B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58B Gene

No ASD Table

Relevant External Links for SNORD58B Gene

GeneLoc Exon Structure for
SNORD58B
ECgene alternative splicing isoforms for
SNORD58B

Expression for SNORD58B Gene

mRNA expression in normal human tissues for SNORD58B Gene

Integrated Proteomics: protein expression from for SNORD58B Gene

genes like me logo Genes that share expressions with SNORD58B: view

Orthologs for SNORD58B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD58 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD58 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD58 37
  • 83 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22354 37
  • 86 (a)
OneToMany
Snord58b 16
Snord58b 37
  • 91 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD58 37
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD58 37
  • 85 (a)
ManyToMany
SNORD58 37
  • 82 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD58 37
  • 69 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD58 37
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD58 37
  • 64 (a)
ManyToMany
Species with no ortholog for SNORD58B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD58B Gene

ENSEMBL:
Gene Tree for SNORD58B (if available)
TreeFam:
Gene Tree for SNORD58B (if available)

Paralogs for SNORD58B Gene

No data available for Paralogs for SNORD58B Gene

Variants for SNORD58B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD58B Gene

Variant ID Type Subtype PubMed ID
nsv2294 CNV Loss 18451855

Relevant External Links for SNORD58B Gene

HapMap Linkage Disequilibrium report
SNORD58B

No data available for Sequence variations from dbSNP and Humsavar for SNORD58B Gene

Disorders for SNORD58B Gene

No disorders were found for SNORD58B Gene.

No data available for UniProtKB/Swiss-Prot for SNORD58B Gene

Publications for SNORD58B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD58B Gene

Sources for SNORD58B Gene

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