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Aliases for SNORD58B Gene

Subcategory (RNA class) for SNORD58B Gene


Quality Score for this RNA gene is


Aliases for SNORD58B Gene

  • Small Nucleolar RNA, C/D Box 58B 2 3 5
  • RNA, U58B Small Nuclear 2 3
  • RNU58B 3
  • U58b 3

External Ids for SNORD58B Gene

ORGUL Members for SNORD58B Gene

Previous HGNC Symbols for SNORD58B Gene

  • RNU58B

Previous GeneCards Identifiers for SNORD58B Gene

  • GC18U900303
  • GC18M045286
  • GC18M045290
  • GC18M045292
  • GC18M045307
  • GC18M047018
  • GC18M043872
  • GC18M049492
  • GC18M049498
  • GC18M049500
  • GC18M049502

Summaries for SNORD58B Gene

GeneCards Summary for SNORD58B Gene

SNORD58B (Small Nucleolar RNA, C/D Box 58B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58B Gene

Genomics for SNORD58B Gene

Regulatory Elements for SNORD58B Gene

Promoters for SNORD58B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000277504 -271 2001 PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF302

Genomic Location for SNORD58B Gene

49,491,664 bp from pter
49,491,729 bp from pter
66 bases
Minus strand

Genomic View for SNORD58B Gene

Genes around SNORD58B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD58B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD58B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58B Gene

Proteins for SNORD58B Gene

Post-translational modifications for SNORD58B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58B Gene

Domains & Families for SNORD58B Gene

Gene Families for SNORD58B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD58B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD58B Gene

Function for SNORD58B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD58B Gene

Localization for SNORD58B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD58B Gene

Pathways & Interactions for SNORD58B Gene

SuperPathways for SNORD58B Gene

No Data Available

Interacting Proteins for SNORD58B Gene

Gene Ontology (GO) - Biological Process for SNORD58B Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD58B Gene

Transcripts for SNORD58B Gene

mRNA/cDNA for SNORD58B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58B Gene

No ASD Table

Relevant External Links for SNORD58B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD58B Gene

mRNA expression in normal human tissues for SNORD58B Gene

Protein differential expression in normal tissues from HIPED for SNORD58B Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SNORD58B Gene

Protein tissue co-expression partners for SNORD58B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD58B Gene:

genes like me logo Genes that share expression patterns with SNORD58B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SNORD58B Gene

Orthologs for SNORD58B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58B Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD58 35
  • 100 (a)
(Bos Taurus)
Mammalia SNORD58 35
  • 98 (a)
(Mus musculus)
Mammalia Snord58b 35
  • 91 (a)
Gm22354 35
  • 86 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD58 35 35
  • 85 (a)
(Canis familiaris)
Mammalia SNORD58 35
  • 83 (a)
(Monodelphis domestica)
Mammalia SNORD58 35
  • 81 (a)
(Gallus gallus)
Aves SNORD58 35
  • 69 (a)
(Anolis carolinensis)
Reptilia SNORD58 35
  • 79 (a)
(Danio rerio)
Actinopterygii SNORD58 35
  • 64 (a)
Species where no ortholog for SNORD58B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD58B Gene

Gene Tree for SNORD58B (if available)
Gene Tree for SNORD58B (if available)

Paralogs for SNORD58B Gene

No data available for Paralogs for SNORD58B Gene

Variants for SNORD58B Gene

Sequence variations from dbSNP and Humsavar for SNORD58B Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs111650629 -- 49,492,344(+) GGATT(C/T)AGTAG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs112025301 -- 49,491,586(+) TCACC(A/C/T)AGAGG downstream-variant-500B, upstream-variant-2KB, splice-acceptor-variant, utr-variant-5-prime
rs112270350 -- 49,492,869(+) GTAAT(C/G)AGGAA upstream-variant-2KB
rs113963488 -- 49,492,272(+) CGACT(C/G)ACCCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs11537617 -- 49,491,633(-) TGAAT(C/G)AGTTA intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SNORD58B Gene

Variant ID Type Subtype PubMed ID
nsv1065279 CNV gain 25217958
nsv2294 CNV deletion 18451855

Relevant External Links for SNORD58B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD58B Gene

Disorders for SNORD58B Gene

Relevant External Links for SNORD58B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD58B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD58B Gene

Publications for SNORD58B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD58B Gene

Sources for SNORD58B Gene

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