Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD58A Gene

Subcategory (RNA class) for SNORD58A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD58A Gene

  • Small Nucleolar RNA, C/D Box 58A 2 3 5
  • RNA, U58A Small Nuclear 2 3
  • RNU58A 3
  • U58a 3

External Ids for SNORD58A Gene

Previous HGNC Symbols for SNORD58A Gene

  • RNU58A

Previous GeneCards Identifiers for SNORD58A Gene

  • GC18M045282
  • GC18M045285
  • GC18M045289
  • GC18M045291
  • GC18M045297
  • GC18M045302
  • GC18M045308
  • GC18M047017
  • GC18M043871

Summaries for SNORD58A Gene

GeneCards Summary for SNORD58A Gene

SNORD58A (Small Nucleolar RNA, C/D Box 58A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58A Gene

Genomics for SNORD58A Gene

Regulatory Elements for SNORD58A Gene

Promoters for SNORD58A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNORD58A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD58A Gene

Chromosome:
18
Start:
49,491,283 bp from pter
End:
49,491,347 bp from pter
Size:
65 bases
Orientation:
Minus strand

Genomic View for SNORD58A Gene

Genes around SNORD58A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD58A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD58A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58A Gene

Proteins for SNORD58A Gene

Post-translational modifications for SNORD58A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58A Gene

Domains & Families for SNORD58A Gene

Gene Families for SNORD58A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD58A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD58A Gene

Function for SNORD58A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD58A Gene

Localization for SNORD58A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD58A Gene

Pathways & Interactions for SNORD58A Gene

SuperPathways for SNORD58A Gene

No Data Available

Interacting Proteins for SNORD58A Gene

Gene Ontology (GO) - Biological Process for SNORD58A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD58A Gene

Drugs & Compounds for SNORD58A Gene

No Compound Related Data Available

Transcripts for SNORD58A Gene

mRNA/cDNA for SNORD58A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58A Gene

No ASD Table

Relevant External Links for SNORD58A Gene

GeneLoc Exon Structure for
SNORD58A
ECgene alternative splicing isoforms for
SNORD58A

Expression for SNORD58A Gene

mRNA expression in normal human tissues for SNORD58A Gene

genes like me logo Genes that share expression patterns with SNORD58A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD58A Gene

Orthologs for SNORD58A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORD58 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD58 36
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD58 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23301 36
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD58 36
  • 72 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORD58 36
  • 98 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD58 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD58 36
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD58 36
  • 68 (a)
ManyToMany
Species with no ortholog for SNORD58A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD58A Gene

ENSEMBL:
Gene Tree for SNORD58A (if available)
TreeFam:
Gene Tree for SNORD58A (if available)

Paralogs for SNORD58A Gene

No data available for Paralogs for SNORD58A Gene

Variants for SNORD58A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD58A Gene

Variant ID Type Subtype PubMed ID
nsv2294 CNV Loss 18451855

Relevant External Links for SNORD58A Gene

HapMap Linkage Disequilibrium report
SNORD58A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SNORD58A Gene

Disorders for SNORD58A Gene

Relevant External Links for SNORD58A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD58A

No disorders were found for SNORD58A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD58A Gene

Publications for SNORD58A Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 67
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD58A Gene

Sources for SNORD58A Gene

Back to Top

Content