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Aliases for SNORD58A Gene

Subcategory (RNA class) for SNORD58A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD58A Gene

  • Small Nucleolar RNA, C/D Box 58A 2 3 5
  • RNA, U58A Small Nuclear 2 3
  • RNU58A 3
  • U58a 3

External Ids for SNORD58A Gene

Previous HGNC Symbols for SNORD58A Gene

  • RNU58A

Previous GeneCards Identifiers for SNORD58A Gene

  • GC18M045282
  • GC18M045285
  • GC18M045289
  • GC18M045291
  • GC18M045297
  • GC18M045302
  • GC18M045308
  • GC18M047017
  • GC18M043871

Summaries for SNORD58A Gene

GeneCards Summary for SNORD58A Gene

SNORD58A (Small Nucleolar RNA, C/D Box 58A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58A Gene

Genomics for SNORD58A Gene

Regulatory Elements for SNORD58A Gene

Enhancers for SNORD58A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G049520 0.9 ENCODE 11.1 -29.9 -29905 0.9 ZSCAN4 INSM2 KLF17 FEZF1 ZEB1 GLIS2 ZNF366 ZNF416 EGR2 ZNF362 LIPG RPL17-C18orf32 SNORD58A SNORD58C DYM C18orf32 LOC101928144 GC18M049549
GH18G049465 0.7 ENCODE 11.2 +25.9 25852 0.7 TEAD4 ZFP37 FEZF1 ZNF501 ZIC2 OSR2 ZNF664 HDAC2 GLIS1 ZNF24 SNORD58C SNORD58A RPL17-C18orf32 PRR13P4 DYM
GH18G049485 1.2 ENCODE 0.7 +1.5 1482 8.4 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC DYM C18orf32 RPL17 ACAA2 SCARNA17 ENSG00000252139 LIPG MIR1539 GC18M049490 GC18M049509
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD58A on UCSC Golden Path with GeneCards custom track

Promoters for SNORD58A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000103216 -653 1601 PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766

Genomic Location for SNORD58A Gene

Chromosome:
18
Start:
49,491,283 bp from pter
End:
49,491,347 bp from pter
Size:
65 bases
Orientation:
Minus strand

Genomic View for SNORD58A Gene

Genes around SNORD58A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD58A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD58A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58A Gene

Proteins for SNORD58A Gene

Post-translational modifications for SNORD58A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58A Gene

Domains & Families for SNORD58A Gene

Gene Families for SNORD58A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD58A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD58A Gene

Function for SNORD58A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD58A Gene

Localization for SNORD58A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD58A Gene

Pathways & Interactions for SNORD58A Gene

SuperPathways for SNORD58A Gene

No Data Available

Interacting Proteins for SNORD58A Gene

Gene Ontology (GO) - Biological Process for SNORD58A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD58A Gene

Drugs & Compounds for SNORD58A Gene

No Compound Related Data Available

Transcripts for SNORD58A Gene

mRNA/cDNA for SNORD58A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58A Gene

No ASD Table

Relevant External Links for SNORD58A Gene

GeneLoc Exon Structure for
SNORD58A
ECgene alternative splicing isoforms for
SNORD58A

Expression for SNORD58A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD58A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD58A Gene:

SNORD58A
genes like me logo Genes that share expression patterns with SNORD58A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD58A Gene

Orthologs for SNORD58A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD58 35
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23301 35
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD58 35
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD58 35
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD58 35
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD58 35
  • 72 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD58 35
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD58 35
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD58 35
  • 68 (a)
ManyToMany
Species where no ortholog for SNORD58A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD58A Gene

ENSEMBL:
Gene Tree for SNORD58A (if available)
TreeFam:
Gene Tree for SNORD58A (if available)

Paralogs for SNORD58A Gene

No data available for Paralogs for SNORD58A Gene

Variants for SNORD58A Gene

Sequence variations from dbSNP and Humsavar for SNORD58A Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1000701955 -- 49,492,482(+) GAGGA(A/G)GAGCG upstream-variant-2KB, utr-variant-5-prime
rs1000813008 -- 49,492,437(+) CGGAG(C/T)AACGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001163459 -- 49,492,530(+) GCGAG(A/T)TTCGT upstream-variant-2KB, utr-variant-5-prime
rs1001237844 -- 49,492,188(+) CACGG(C/T)GGGCC intron-variant, upstream-variant-2KB
rs1001704327 -- 49,492,884(+) TCAGG(A/G)TGGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD58A Gene

Variant ID Type Subtype PubMed ID
nsv1065279 CNV gain 25217958
nsv2294 CNV deletion 18451855
nsv978629 CNV duplication 23825009

Relevant External Links for SNORD58A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD58A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD58A Gene

Disorders for SNORD58A Gene

Relevant External Links for SNORD58A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD58A

No disorders were found for SNORD58A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD58A Gene

Publications for SNORD58A Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD58A Gene

Sources for SNORD58A Gene

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