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Aliases for SNORD56B Gene

Subcategory (RNA class) for SNORD56B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD56B Gene

  • Small Nucleolar RNA, C/D Box 56B 2 3
  • RNA, U56B Small Nuclear 2 3
  • RNU56B 3

External Ids for SNORD56B Gene

ORGUL Members for SNORD56B Gene

Previous HGNC Symbols for SNORD56B Gene

  • RNU56B

Previous GeneCards Identifiers for SNORD56B Gene

  • GC14P070937
  • GC14P071865
  • GC14P052031

Summaries for SNORD56B Gene

GeneCards Summary for SNORD56B Gene

SNORD56B (Small Nucleolar RNA, C/D Box 56B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD56B Gene

Genomics for SNORD56B Gene

Regulatory Elements for SNORD56B Gene

Genomic Location for SNORD56B Gene

Start:
71,398,337 bp from pter
End:
71,398,407 bp from pter
Size:
71 bases
Orientation:
Plus strand

Genomic View for SNORD56B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD56B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD56B Gene

Proteins for SNORD56B Gene

Post-translational modifications for SNORD56B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD56B Gene

Domains for SNORD56B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD56B Gene

Function for SNORD56B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD56B Gene

Localization for SNORD56B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD56B Gene

Pathways for SNORD56B Gene

SuperPathways for SNORD56B Gene

No Data Available

Interacting Proteins for SNORD56B Gene

Gene Ontology (GO) - Biological Process for SNORD56B Gene

None

No data available for Pathways by source for SNORD56B Gene

Transcripts for SNORD56B Gene

mRNA/cDNA for SNORD56B Gene

(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD56B Gene

No ASD Table

Relevant External Links for SNORD56B Gene

GeneLoc Exon Structure for
SNORD56B
ECgene alternative splicing isoforms for
SNORD56B

Expression for SNORD56B Gene

mRNA expression in normal human tissues for SNORD56B Gene

genes like me logo Genes that share expressions with SNORD56B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD56B Gene

Orthologs for SNORD56B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD56B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD56 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD56 36
  • 90 (a)
ManyToMany
SNORD56 36
  • 90 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORD56 36
  • 89 (a)
ManyToMany
SNORD56 36
  • 85 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23650 36
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD56 36
  • 76 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD56 36
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD56 36
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD56 36
  • 65 (a)
OneToMany
Species with no ortholog for SNORD56B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD56B Gene

ENSEMBL:
Gene Tree for SNORD56B (if available)
TreeFam:
Gene Tree for SNORD56B (if available)

Paralogs for SNORD56B Gene

No data available for Paralogs for SNORD56B Gene

Variants for SNORD56B Gene

Sequence variations from dbSNP and Humsavar for SNORD56B Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs8019634 -- 71,397,732(+) TTTCT(C/T)TGCAG upstream-variant-2KB
rs8019998 -- 71,398,009(+) AAAAA(A/T)TTTTT upstream-variant-2KB
rs35815604 -- 71,398,509(+) GTATT(-/C)CCCTG downstream-variant-500B
rs75635210 -- 71,397,923(+) CCTTT(A/G)TAAGA upstream-variant-2KB
rs112456772 -- 71,397,500(+) TTTTT(G/T)GGGGG upstream-variant-2KB

Relevant External Links for SNORD56B Gene

HapMap Linkage Disequilibrium report
SNORD56B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SNORD56B Gene

Disorders for SNORD56B Gene

No disorders were found for SNORD56B Gene.

No data available for UniProtKB/Swiss-Prot for SNORD56B Gene

Publications for SNORD56B Gene

No publications were found for SNORD56B Gene.

Products for SNORD56B Gene

Sources for SNORD56B Gene

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