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Aliases for SNORD56 Gene

Subcategory (RNA class) for SNORD56 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD56 Gene

  • Small Nucleolar RNA, C/D Box 56 2 3 5
  • RNA, U56 Small Nuclear 2 3
  • RNU56 3
  • U56 3

External Ids for SNORD56 Gene

Previous HGNC Symbols for SNORD56 Gene

  • RNU56

Previous GeneCards Identifiers for SNORD56 Gene

  • GC20P002591
  • GC20P002593
  • GC20P002597
  • GC20P002604
  • GC20P002609
  • GC20P002616
  • GC20P002637
  • GC20P002655
  • GC20P002717
  • GC20P002728
  • GC20P002737
  • GC20P002777

Summaries for SNORD56 Gene

GeneCards Summary for SNORD56 Gene

SNORD56 (Small Nucleolar RNA, C/D Box 56) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD56 Gene

Genomics for SNORD56 Gene

Regulatory Elements for SNORD56 Gene

Enhancers for SNORD56 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F002624 0.9 ENCODE 11.7 -32.3 -32255 0.1 SMARCA4 MIR1292 SNORD110 NOP56 SNORD56 SNORD57 SNORD86 GC20P002851 GC20M002600
GH20F002604 0.5 ENCODE 11 -52.3 -52275 0.2 TMC2 MIR1292 NOP56 SNORD110 SNORD56 SNORD57 SNORD86 GC20M002600 GC20P002851
GH20F002605 0.5 ENCODE 11 -52.0 -51955 0.2 TMC2 MIR1292 NOP56 SNORD110 SNORD56 SNORD57 SNORD86 GC20M002600 GC20P002851
GH20F002559 0.4 Ensembl 10.9 -97.5 -97524 0.2 SOX13 ZBTB48 CEBPA NR2F6 EZH2 TMC2 MIR1292 NOP56 SNORD110 SNORD56 SNORD57 SNORD86 LOC105372504 GC20M002600
GH20F002740 0.5 ENCODE 10.8 +85.3 85333 2.3 CTCF DRAP1 ARID4B ZNF48 RAD21 HBP1 GLIS2 ZBTB48 ZNF143 GATAD2A EBF4 VPS16 PTPRA PCED1A TMEM239 C20orf141 ENSG00000241690 ENSG00000228293 IDH3B MIR1292
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD56 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD56 Gene

Chromosome:
20
Start:
2,656,624 bp from pter
End:
2,656,694 bp from pter
Size:
71 bases
Orientation:
Plus strand

Genomic View for SNORD56 Gene

Genes around SNORD56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD56 Gene

Proteins for SNORD56 Gene

Post-translational modifications for SNORD56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD56 Gene

Domains & Families for SNORD56 Gene

Gene Families for SNORD56 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD56: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD56 Gene

Function for SNORD56 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD56 Gene

Localization for SNORD56 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD56 Gene

Pathways & Interactions for SNORD56 Gene

SuperPathways for SNORD56 Gene

No Data Available

Interacting Proteins for SNORD56 Gene

Gene Ontology (GO) - Biological Process for SNORD56 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD56 Gene

Transcripts for SNORD56 Gene

mRNA/cDNA for SNORD56 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD56 Gene

No ASD Table

Relevant External Links for SNORD56 Gene

GeneLoc Exon Structure for
SNORD56
ECgene alternative splicing isoforms for
SNORD56

Expression for SNORD56 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD56 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD56 Gene:

SNORD56
genes like me logo Genes that share expression patterns with SNORD56: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD56 Gene

Orthologs for SNORD56 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD56 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23650 35
  • 93 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD56 35
  • 83 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD56 35
  • 79 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD56 35
  • 73 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD56 35
  • 67 (a)
OneToMany
Species where no ortholog for SNORD56 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD56 Gene

ENSEMBL:
Gene Tree for SNORD56 (if available)
TreeFam:
Gene Tree for SNORD56 (if available)

Paralogs for SNORD56 Gene

No data available for Paralogs for SNORD56 Gene

Variants for SNORD56 Gene

Sequence variations from dbSNP and Humsavar for SNORD56 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs8958 Likely benign 2,656,425(+) AACAC(C/T)CCAAA nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs11553605 -- 2,655,437(+) ACAAG(C/T)TGGAG nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs11553608 -- 2,654,790(+) TGACC(A/G/T)ATCTG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs116626054 -- 2,656,558(+) TGGGT(C/G/T)GGGGG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs137949797 -- 2,656,628(+) TCCAC(A/G)ATGAT intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD56 Gene

Variant ID Type Subtype PubMed ID
esv3644998 CNV gain 21293372
nsv1057464 CNV gain 25217958
nsv470535 CNV gain 18288195

Relevant External Links for SNORD56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD56 Gene

Disorders for SNORD56 Gene

Relevant External Links for SNORD56

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD56

No disorders were found for SNORD56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD56 Gene

Publications for SNORD56 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD56 Gene

Sources for SNORD56 Gene

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