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Aliases for SNORD55 Gene

Subcategory (RNA class) for SNORD55 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD55 Gene

  • Small Nucleolar RNA, C/D Box 55 2 3
  • Small Nucleolar RNA, C/D Box 39 2 3
  • RNA, U39 Small Nucleolar 2 3
  • RNA, U55 Small Nuclear 2 3
  • U39 Small Nucleolar RNA 3
  • U39 SnoRNA 3
  • SNORD39 3
  • RNU39 3
  • RNU55 3
  • U39 3
  • U55 3

External Ids for SNORD55 Gene

Previous HGNC Symbols for SNORD55 Gene

  • RNU55
  • RNU39
  • SNORD39

Previous GeneCards Identifiers for SNORD55 Gene

  • GC01P045014
  • GC01P045241

Summaries for SNORD55 Gene

GeneCards Summary for SNORD55 Gene

SNORD55 (Small Nucleolar RNA, C/D Box 55) is an RNA Gene, and is affiliated with the snoRNA class. Among its related pathways are CFTR translational fidelity (class I mutations).

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD55 Gene

Genomics for SNORD55 Gene

Regulatory Elements for SNORD55 Gene

Genomic Location for SNORD55 Gene

Start:
44,775,864 bp from pter
End:
44,775,943 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for SNORD55 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD55 Gene

Proteins for SNORD55 Gene

Post-translational modifications for SNORD55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD55 Gene

Domains for SNORD55 Gene

Gene Families for SNORD55 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD55: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD55 Gene

Function for SNORD55 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD55 Gene

Localization for SNORD55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD55 Gene

Pathways for SNORD55 Gene

genes like me logo Genes that share pathways with SNORD55: view

Pathways by source for SNORD55 Gene

1 BioSystems pathway for SNORD55 Gene

Interacting Proteins for SNORD55 Gene

Gene Ontology (GO) - Biological Process for SNORD55 Gene

None

Transcripts for SNORD55 Gene

mRNA/cDNA for SNORD55 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD55

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD55 Gene

No ASD Table

Relevant External Links for SNORD55 Gene

GeneLoc Exon Structure for
SNORD55
ECgene alternative splicing isoforms for
SNORD55

Expression for SNORD55 Gene

mRNA expression in normal human tissues for SNORD55 Gene

genes like me logo Genes that share expressions with SNORD55: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD55 Gene

Orthologs for SNORD55 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD39 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD39 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD39 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord55 16
Snord55 36
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD39 36
  • 66 (a)
OneToMany
Species with no ortholog for SNORD55:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD55 Gene

ENSEMBL:
Gene Tree for SNORD55 (if available)
TreeFam:
Gene Tree for SNORD55 (if available)

Paralogs for SNORD55 Gene

No data available for Paralogs for SNORD55 Gene

Variants for SNORD55 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD55 Gene

Variant ID Type Subtype PubMed ID
nsv461406 CNV Loss 19166990
nsv870815 CNV Loss 21882294

Relevant External Links for SNORD55 Gene

HapMap Linkage Disequilibrium report
SNORD55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD55 Gene

Disorders for SNORD55 Gene

No disorders were found for SNORD55 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD55 Gene

Publications for SNORD55 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  2. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  4. A Proteomics Strategy for the Identification of FAT10-Modified Sites by Mass Spectrometry. (PMID: 23862649) Leng L. … Wang J. (J. Proteome Res. 2014) 3

Products for SNORD55 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORD55
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORD55
    • Block miRNA regulation of SNORD55 using miScript Target Protectors

    Sources for SNORD55 Gene

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