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Aliases for SNORD55 Gene

Subcategory (RNA class) for SNORD55 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD55 Gene

  • Small Nucleolar RNA, C/D Box 55 2 3 5
  • Small Nucleolar RNA, C/D Box 39 2 3
  • RNA, U39 Small Nucleolar 2 3
  • RNA, U55 Small Nuclear 2 3
  • U39 Small Nucleolar RNA 3
  • U39 SnoRNA 3
  • SNORD39 3
  • RNU39 3
  • RNU55 3
  • U39 3
  • U55 3

External Ids for SNORD55 Gene

Previous HGNC Symbols for SNORD55 Gene

  • RNU55
  • RNU39
  • SNORD39

Previous GeneCards Identifiers for SNORD55 Gene

  • GC01P045014
  • GC01P045241
  • GC01P044776
  • GC01P044780
  • GC01P044784
  • GC01P044789
  • GC01P044794

Summaries for SNORD55 Gene

GeneCards Summary for SNORD55 Gene

SNORD55 (Small Nucleolar RNA, C/D Box 55) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD55 Gene

Genomics for SNORD55 Gene

Regulatory Elements for SNORD55 Gene

Enhancers for SNORD55 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G044774 1.4 ENCODE dbSUPER 0.7 +0.4 355 3.7 CREB3L1 AGO1 ZFP64 DMAP1 YBX1 YY1 ZNF143 SP3 MCM3 NFYC RPS8 DMAP1 ZSWIM5 TOE1 GPBP1L1 LOC101929609 PTCH2 UROD BEST4 MMACHC
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD55 on UCSC Golden Path with GeneCards custom track

Promoters for SNORD55 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005792 -64 2001 CREB3L1 AGO1 ZFP64 DMAP1 YBX1 YY1 ZNF143 SP3 NFYC TBX21

Genomic Location for SNORD55 Gene

Chromosome:
1
Start:
44,775,864 bp from pter
End:
44,775,943 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for SNORD55 Gene

Genes around SNORD55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD55 Gene

Proteins for SNORD55 Gene

Post-translational modifications for SNORD55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD55 Gene

Domains & Families for SNORD55 Gene

Gene Families for SNORD55 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD55: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD55 Gene

Function for SNORD55 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD55 Gene

Localization for SNORD55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD55 Gene

Pathways & Interactions for SNORD55 Gene

SuperPathways for SNORD55 Gene

No Data Available

Interacting Proteins for SNORD55 Gene

Gene Ontology (GO) - Biological Process for SNORD55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD55 Gene

Drugs & Compounds for SNORD55 Gene

No Compound Related Data Available

Transcripts for SNORD55 Gene

mRNA/cDNA for SNORD55 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD55 Gene

No ASD Table

Relevant External Links for SNORD55 Gene

GeneLoc Exon Structure for
SNORD55
ECgene alternative splicing isoforms for
SNORD55

Expression for SNORD55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD55 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD55 Gene:

SNORD55
genes like me logo Genes that share expression patterns with SNORD55: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD55 Gene

Orthologs for SNORD55 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD39 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord55 35
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD39 35
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD39 35
  • 85 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD39 35
  • 66 (a)
OneToMany
Species where no ortholog for SNORD55 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD55 Gene

ENSEMBL:
Gene Tree for SNORD55 (if available)
TreeFam:
Gene Tree for SNORD55 (if available)

Paralogs for SNORD55 Gene

No data available for Paralogs for SNORD55 Gene

Variants for SNORD55 Gene

Sequence variations from dbSNP and Humsavar for SNORD55 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1002100619 -- 44,776,212(+) CTTTC(A/C)GTGTG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002496332 -- 44,774,649(+) CCTGC(C/G)TCAGC upstream-variant-2KB
rs1002854316 -- 44,774,475(+) TTCAG(C/T)CTCCA upstream-variant-2KB
rs1003081053 -- 44,775,795(+) TCCGG(G/T)CCGCG intron-variant, upstream-variant-2KB
rs1004247964 -- 44,776,238(+) TTCTT(C/G)GGCTC intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD55 Gene

Variant ID Type Subtype PubMed ID
nsv461406 CNV loss 19166990
nsv546145 CNV loss 21841781
nsv998871 CNV loss 25217958

Relevant External Links for SNORD55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD55 Gene

Disorders for SNORD55 Gene

Relevant External Links for SNORD55

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD55

No disorders were found for SNORD55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD55 Gene

Publications for SNORD55 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD55 Gene

Sources for SNORD55 Gene

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