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Aliases for SNORD53 Gene

Subcategory (RNA class) for SNORD53 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD53 Gene

  • Small Nucleolar RNA, C/D Box 53 2 3 5
  • RNA, U53 Small Nuclear 2 3
  • SNORD53A 3
  • RNU53 3
  • U53 3

External Ids for SNORD53 Gene

ORGUL Members for SNORD53 Gene

Previous HGNC Symbols for SNORD53 Gene

  • RNU53

Previous GeneCards Identifiers for SNORD53 Gene

  • GC02P029003
  • GC02P029149

Summaries for SNORD53 Gene

GeneCards Summary for SNORD53 Gene

SNORD53 (Small Nucleolar RNA, C/D Box 53) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD53 Gene

Genomics for SNORD53 Gene

Regulatory Elements for SNORD53 Gene


Genomic Location for SNORD53 Gene

Chromosome:
2
Start:
28,927,067 bp from pter
End:
28,927,144 bp from pter
Size:
78 bases
Orientation:
Plus strand

Genomic View for SNORD53 Gene

Genes around SNORD53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD53 Gene

Proteins for SNORD53 Gene

Post-translational modifications for SNORD53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD53 Gene

Domains & Families for SNORD53 Gene

Gene Families for SNORD53 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD53: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD53 Gene

Function for SNORD53 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD53 Gene

Localization for SNORD53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD53 Gene

Pathways & Interactions for SNORD53 Gene

SuperPathways for SNORD53 Gene

No Data Available

Interacting Proteins for SNORD53 Gene

Gene Ontology (GO) - Biological Process for SNORD53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD53 Gene

Drugs & Compounds for SNORD53 Gene

No Compound Related Data Available

Transcripts for SNORD53 Gene

mRNA/cDNA for SNORD53 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD53 Gene

No ASD Table

Relevant External Links for SNORD53 Gene

GeneLoc Exon Structure for
SNORD53
ECgene alternative splicing isoforms for
SNORD53

Expression for SNORD53 Gene

mRNA expression in normal human tissues for SNORD53 Gene

genes like me logo Genes that share expression patterns with SNORD53: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD53 Gene

Orthologs for SNORD53 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD53 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORD53_SNORD92 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD53_SNORD92 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord53 36
  • 88 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNORD53_SNORD92 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD53_SNORD92 36
  • 80 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD53_SNORD92 36
  • 78 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD53_SNORD92 36
  • 59 (a)
ManyToMany
SNORD53_SNORD92 36
  • 60 (a)
ManyToMany
SNORD53_SNORD92 36
  • 62 (a)
ManyToMany
SNORD53_SNORD92 36
  • 66 (a)
ManyToMany
SNORD53_SNORD92 36
  • 61 (a)
ManyToMany
Species with no ortholog for SNORD53:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD53 Gene

ENSEMBL:
Gene Tree for SNORD53 (if available)
TreeFam:
Gene Tree for SNORD53 (if available)

Paralogs for SNORD53 Gene

No data available for Paralogs for SNORD53 Gene

Variants for SNORD53 Gene

Sequence variations from dbSNP and Humsavar for SNORD53 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs757600835 -- 28,925,810(+) AAAAA(-/AAG)GAGAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD53 Gene

Variant ID Type Subtype PubMed ID
nsv817695 CNV Gain 17921354

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SNORD53 Gene

Disorders for SNORD53 Gene

Relevant External Links for SNORD53

Genetic Association Database (GAD)
SNORD53
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD53

No disorders were found for SNORD53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD53 Gene

Publications for SNORD53 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 67
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD53 Gene

Sources for SNORD53 Gene

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