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Aliases for SNORD52 Gene

Subcategory (RNA class) for SNORD52 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD52 Gene

  • Small Nucleolar RNA, C/D Box 52 2 3 5
  • RNA, U52 Small Nuclear 2 3
  • RNU52 3
  • U52 3

External Ids for SNORD52 Gene

Previous HGNC Symbols for SNORD52 Gene

  • RNU52

Previous GeneCards Identifiers for SNORD52 Gene

  • GC06P031914
  • GC06Pf31935
  • GC06P031802
  • GC06P031804
  • GC06P031591
  • GC06P031838
  • GC06P031841

Summaries for SNORD52 Gene

GeneCards Summary for SNORD52 Gene

SNORD52 (Small Nucleolar RNA, C/D Box 52) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD52 Gene

Genomics for SNORD52 Gene

Regulatory Elements for SNORD52 Gene

Promoters for SNORD52 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNORD52 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD52 Gene

Chromosome:
6
Start:
31,837,076 bp from pter
End:
31,837,142 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD52 Gene

Genes around SNORD52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORD52 Gene

Post-translational modifications for SNORD52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD52 Gene

Domains & Families for SNORD52 Gene

Gene Families for SNORD52 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD52: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD52 Gene

Function for SNORD52 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD52 Gene

Localization for SNORD52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD52 Gene

Pathways & Interactions for SNORD52 Gene

SuperPathways for SNORD52 Gene

No Data Available

Interacting Proteins for SNORD52 Gene

Gene Ontology (GO) - Biological Process for SNORD52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD52 Gene

Drugs & Compounds for SNORD52 Gene

No Compound Related Data Available

Transcripts for SNORD52 Gene

mRNA/cDNA for SNORD52 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD52 Gene

No ASD Table

Relevant External Links for SNORD52 Gene

GeneLoc Exon Structure for
SNORD52
ECgene alternative splicing isoforms for
SNORD52

Expression for SNORD52 Gene

mRNA expression in normal human tissues for SNORD52 Gene

genes like me logo Genes that share expression patterns with SNORD52: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD52 Gene

Orthologs for SNORD52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD52 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORD52 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD52 36
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD52 36
  • 67 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord52 36
  • 82 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SNORD52 36
  • 100 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD52 36
  • 60 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD52 36
  • 58 (a)
OneToMany
SNORD52 36
  • 52 (a)
OneToMany
SNORD52 36
  • 57 (a)
OneToMany
SNORD52 36
  • 49 (a)
OneToMany
SNORD52 36
  • 52 (a)
OneToMany
SNORD52 36
  • 54 (a)
OneToMany
SNORD52 36
  • 54 (a)
OneToMany
SNORD52 36
  • 51 (a)
OneToMany
Species with no ortholog for SNORD52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD52 Gene

ENSEMBL:
Gene Tree for SNORD52 (if available)
TreeFam:
Gene Tree for SNORD52 (if available)

Paralogs for SNORD52 Gene

No data available for Paralogs for SNORD52 Gene

Variants for SNORD52 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD52 Gene

Variant ID Type Subtype PubMed ID
dgv6583n71 CNV Loss 21882294
dgv6592n71 CNV Loss 21882294

Relevant External Links for SNORD52 Gene

HapMap Linkage Disequilibrium report
SNORD52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SNORD52 Gene

Disorders for SNORD52 Gene

Relevant External Links for SNORD52

Genetic Association Database (GAD)
SNORD52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD52

No disorders were found for SNORD52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD52 Gene

Publications for SNORD52 Gene

  1. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J. … Goldstein D.B. (PLoS Genet. 2009) 3 48 67
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD52 Gene

Sources for SNORD52 Gene

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