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Aliases for SNORD52 Gene

Subcategory (RNA class) for SNORD52 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD52 Gene

  • Small Nucleolar RNA, C/D Box 52 2 3 5
  • RNA, U52 Small Nuclear 2 3
  • RNU52 3
  • U52 3

External Ids for SNORD52 Gene

Previous HGNC Symbols for SNORD52 Gene

  • RNU52

Previous GeneCards Identifiers for SNORD52 Gene

  • GC06P031914
  • GC06Pf31935
  • GC06P031802
  • GC06P031804
  • GC06P031591
  • GC06P031838
  • GC06P031841
  • GC06P031843
  • GC06P031880

Summaries for SNORD52 Gene

GeneCards Summary for SNORD52 Gene

SNORD52 (Small Nucleolar RNA, C/D Box 52) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD52 Gene

Genomics for SNORD52 Gene

Regulatory Elements for SNORD52 Gene

Enhancers for SNORD52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F031861 0.2 ENCODE 11.8 +27.0 27040 4.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF548 ZNF263 LY6G5B LSM2 MICA C4A SNORA38 ENSG00000233902 LOC102725019 DDX39B STK19B LY6G5C
GH06F031847 0.4 ENCODE 0.4 +10.7 10724 1.0 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 CBX5 PAF1 VARS BAG6 GPANK1 EHMT2 MICB LSM2 PRRT1 ZBTB12 CSNK2B MICA
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD52 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD52 Gene

Chromosome:
6
Start:
31,837,076 bp from pter
End:
31,837,142 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD52 Gene

Genes around SNORD52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORD52 Gene

Post-translational modifications for SNORD52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD52 Gene

Domains & Families for SNORD52 Gene

Gene Families for SNORD52 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD52: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD52 Gene

Function for SNORD52 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD52 Gene

Localization for SNORD52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD52 Gene

Pathways & Interactions for SNORD52 Gene

SuperPathways for SNORD52 Gene

No Data Available

Interacting Proteins for SNORD52 Gene

Gene Ontology (GO) - Biological Process for SNORD52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD52 Gene

Transcripts for SNORD52 Gene

mRNA/cDNA for SNORD52 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD52 Gene

No ASD Table

Relevant External Links for SNORD52 Gene

GeneLoc Exon Structure for
SNORD52
ECgene alternative splicing isoforms for
SNORD52

Expression for SNORD52 Gene

mRNA expression in normal human tissues for SNORD52 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD52 Gene:

SNORD52
genes like me logo Genes that share expression patterns with SNORD52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD52 Gene

Orthologs for SNORD52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD52 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD52 35
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD52 35
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord52 35
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD52 35
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD52 35
  • 60 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD52 35 35 35 35 35 35 35 35
  • 58 (a)
OneToMany
Species where no ortholog for SNORD52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD52 Gene

ENSEMBL:
Gene Tree for SNORD52 (if available)
TreeFam:
Gene Tree for SNORD52 (if available)

Paralogs for SNORD52 Gene

No data available for Paralogs for SNORD52 Gene

Variants for SNORD52 Gene

Sequence variations from dbSNP and Humsavar for SNORD52 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10456397 -- 31,836,237(+) CTATA(A/T)TCCAT intron-variant, upstream-variant-2KB
rs111432088 -- 31,835,161(+) GAACT(C/T)GGCTA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs112576236 -- 31,835,409(+) CCGTT(A/C)GGAGT intron-variant, downstream-variant-500B, upstream-variant-2KB, splice-acceptor-variant
rs113198480 -- 31,837,337(+) GAGAG(A/C)AGCTT downstream-variant-500B, reference, missense
rs113611046 -- 31,836,684(+) GGGGG(C/T)GGGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD52 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
dgv10461n54 CNV loss 21841781
dgv10463n54 CNV loss 21841781
esv3608569 CNV loss 21293372
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259

Relevant External Links for SNORD52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD52 Gene

Disorders for SNORD52 Gene

Relevant External Links for SNORD52

Genetic Association Database (GAD)
SNORD52
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD52

No disorders were found for SNORD52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD52 Gene

Publications for SNORD52 Gene

  1. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J. … Goldstein D.B. (PLoS Genet. 2009) 3 46 64
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD52 Gene

Sources for SNORD52 Gene

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