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Aliases for SNORD52 Gene

Subcategory (RNA class) for SNORD52 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD52 Gene

  • Small Nucleolar RNA, C/D Box 52 2 3
  • RNA, U52 Small Nuclear 2 3
  • RNU52 3
  • U52 3

External Ids for SNORD52 Gene

Previous HGNC Symbols for SNORD52 Gene

  • RNU52

Previous GeneCards Identifiers for SNORD52 Gene

  • GC06P031914
  • GC06Pf31935
  • GC06P031802
  • GC06P031804
  • GC06P031591

Summaries for SNORD52 Gene

GeneCards Summary for SNORD52 Gene

SNORD52 (Small Nucleolar RNA, C/D Box 52) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD52 include hiv-1.

fRNAdb sequence ontologies for SNORD52 Gene - the ORGUL cluster for this gene includes several descriptions:

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD52 Gene

Genomics for SNORD52 Gene

Regulatory Elements for SNORD52 Gene

Genomic Location for SNORD52 Gene

Start:
31,837,076 bp from pter
End:
31,837,142 bp from pter
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD52 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for SNORD52 Gene

Post-translational modifications for SNORD52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD52 Gene

Domains for SNORD52 Gene

Gene Families for SNORD52 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD52: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD52 Gene

Function for SNORD52 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD52 Gene

Localization for SNORD52 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SNORD52 Gene COMPARTMENTS Subcellular localization image for SNORD52 gene
Compartment Confidence
extracellular 2
cytosol 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNORD52 Gene

Pathways for SNORD52 Gene

SuperPathways for SNORD52 Gene

No Data Available

Interacting Proteins for SNORD52 Gene

Gene Ontology (GO) - Biological Process for SNORD52 Gene

None

No data available for Pathways by source for SNORD52 Gene

Transcripts for SNORD52 Gene

mRNA/cDNA for SNORD52 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD52 Gene

No ASD Table

Relevant External Links for SNORD52 Gene

GeneLoc Exon Structure for
SNORD52
ECgene alternative splicing isoforms for
SNORD52

Expression for SNORD52 Gene

mRNA expression in normal human tissues for SNORD52 Gene

genes like me logo Genes that share expressions with SNORD52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD52 Gene

Orthologs for SNORD52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD52 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD52 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD52 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord52 16
Snord52 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD52 36
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD52 36
  • 60 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD52 36
  • 58 (a)
OneToMany
SNORD52 36
  • 52 (a)
OneToMany
SNORD52 36
  • 57 (a)
OneToMany
SNORD52 36
  • 49 (a)
OneToMany
SNORD52 36
  • 52 (a)
OneToMany
SNORD52 36
  • 54 (a)
OneToMany
SNORD52 36
  • 54 (a)
OneToMany
SNORD52 36
  • 51 (a)
OneToMany
Species with no ortholog for SNORD52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD52 Gene

ENSEMBL:
Gene Tree for SNORD52 (if available)
TreeFam:
Gene Tree for SNORD52 (if available)

Paralogs for SNORD52 Gene

No data available for Paralogs for SNORD52 Gene

Variants for SNORD52 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD52 Gene

Variant ID Type Subtype PubMed ID
dgv6583n71 CNV Loss 21882294
dgv6592n71 CNV Loss 21882294

Relevant External Links for SNORD52 Gene

HapMap Linkage Disequilibrium report
SNORD52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD52 Gene

Disorders for SNORD52 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for SNORD52 Gene including...

Search for SNORD52 Gene in MalaCards »

Relevant External Links for SNORD52

Genetic Association Database (GAD)
SNORD52
genes like me logo Genes that share disorders with SNORD52: view

No data available for UniProtKB/Swiss-Prot for SNORD52 Gene

Publications for SNORD52 Gene

  1. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J. … Goldstein D.B. (PLoS Genet. 2009) 3 48
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD52 Gene

Sources for SNORD52 Gene

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