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Aliases for SNORD50B Gene

Subcategory (RNA class) for SNORD50B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD50B Gene

  • Small Nucleolar RNA, C/D Box 50B 2 3 5
  • U50B 3
  • U50 3

External Ids for SNORD50B Gene

ORGUL Members for SNORD50B Gene

Previous GeneCards Identifiers for SNORD50B Gene

  • GC06U900827
  • GC06M086449
  • GC06M086456
  • GC06M086460
  • GC06M086464
  • GC06M086388
  • GC06M086390
  • GC06M083613
  • GC06M086392
  • GC06M085678
  • GC06M085680

Summaries for SNORD50B Gene

Entrez Gene Summary for SNORD50B Gene

  • SNORD50B is a C/D box-type small nucleolar RNA (snoRNA) that is predicted to function as a guide RNA in 2-prime O-methylation of 28S ribosomal RNA (Tanaka et al., 2000 [PubMed 10792466]).[supplied by OMIM, Feb 2010]

GeneCards Summary for SNORD50B Gene

SNORD50B (Small Nucleolar RNA, C/D Box 50B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD50B Gene

Genomics for SNORD50B Gene

Regulatory Elements for SNORD50B Gene

Promoters for SNORD50B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNORD50B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD50B Gene

Chromosome:
6
Start:
85,677,589 bp from pter
End:
85,677,659 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for SNORD50B Gene

Genes around SNORD50B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD50B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD50B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD50B Gene

Proteins for SNORD50B Gene

Post-translational modifications for SNORD50B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD50B Gene

Domains & Families for SNORD50B Gene

Gene Families for SNORD50B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD50B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD50B Gene

Function for SNORD50B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD50B Gene

Localization for SNORD50B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD50B Gene

Pathways & Interactions for SNORD50B Gene

SuperPathways for SNORD50B Gene

No Data Available

Interacting Proteins for SNORD50B Gene

Gene Ontology (GO) - Biological Process for SNORD50B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD50B Gene

Drugs & Compounds for SNORD50B Gene

No Compound Related Data Available

Transcripts for SNORD50B Gene

mRNA/cDNA for SNORD50B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD50B Gene

No ASD Table

Relevant External Links for SNORD50B Gene

GeneLoc Exon Structure for
SNORD50B
ECgene alternative splicing isoforms for
SNORD50B

Expression for SNORD50B Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORD50B Gene

Orthologs for SNORD50B Gene

Evolution for SNORD50B Gene

ENSEMBL:
Gene Tree for SNORD50B (if available)
TreeFam:
Gene Tree for SNORD50B (if available)

No data available for Orthologs for SNORD50B Gene

Paralogs for SNORD50B Gene

No data available for Paralogs for SNORD50B Gene

Variants for SNORD50B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD50B Gene

Variant ID Type Subtype PubMed ID
nsv886334 CNV Loss 21882294

Relevant External Links for SNORD50B Gene

HapMap Linkage Disequilibrium report
SNORD50B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SNORD50B Gene

Disorders for SNORD50B Gene

Relevant External Links for SNORD50B

Genetic Association Database (GAD)
SNORD50B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD50B

No disorders were found for SNORD50B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD50B Gene

Publications for SNORD50B Gene

  1. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R. … Mori S. (Genes Cells 2000) 2 3 67
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD50B Gene

Sources for SNORD50B Gene

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