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Aliases for SNORD50B Gene

Subcategory (RNA class) for SNORD50B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD50B Gene

  • Small Nucleolar RNA, C/D Box 50B 2 3
  • U50B 3
  • U50 3

External Ids for SNORD50B Gene

ORGUL Members for SNORD50B Gene

Previous GeneCards Identifiers for SNORD50B Gene

  • GC06U900827
  • GC06M086449
  • GC06M086456
  • GC06M086460
  • GC06M086464
  • GC06M086388
  • GC06M086390
  • GC06M083613
  • GC06M086392

Summaries for SNORD50B Gene

Entrez Gene Summary for SNORD50B Gene

  • SNORD50B is a C/D box-type small nucleolar RNA (snoRNA) that is predicted to function as a guide RNA in 2-prime O-methylation of 28S ribosomal RNA (Tanaka et al., 2000 [PubMed 10792466]).[supplied by OMIM, Feb 2010]

GeneCards Summary for SNORD50B Gene

SNORD50B (Small Nucleolar RNA, C/D Box 50B) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD50B include b-cell lymphomas and multiple myeloma.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD50B Gene

Genomics for SNORD50B Gene

Regulatory Elements for SNORD50B Gene

Genomic Location for SNORD50B Gene

Start:
85,677,589 bp from pter
End:
85,677,659 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for SNORD50B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD50B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD50B Gene

Proteins for SNORD50B Gene

Post-translational modifications for SNORD50B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD50B Gene

Domains for SNORD50B Gene

Gene Families for SNORD50B Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD50B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD50B Gene

Function for SNORD50B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD50B Gene

Localization for SNORD50B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD50B Gene

Pathways for SNORD50B Gene

SuperPathways for SNORD50B Gene

No Data Available

Interacting Proteins for SNORD50B Gene

Gene Ontology (GO) - Biological Process for SNORD50B Gene

None

No data available for Pathways by source for SNORD50B Gene

Transcripts for SNORD50B Gene

mRNA/cDNA for SNORD50B Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD50B Gene

No ASD Table

Relevant External Links for SNORD50B Gene

GeneLoc Exon Structure for
SNORD50B
ECgene alternative splicing isoforms for
SNORD50B

Expression for SNORD50B Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD50B Gene

Orthologs for SNORD50B Gene

Evolution for SNORD50B Gene

ENSEMBL:
Gene Tree for SNORD50B (if available)
TreeFam:
Gene Tree for SNORD50B (if available)

No data available for Orthologs for SNORD50B Gene

Paralogs for SNORD50B Gene

No data available for Paralogs for SNORD50B Gene

Variants for SNORD50B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD50B Gene

Variant ID Type Subtype PubMed ID
nsv886334 CNV Loss 21882294

Relevant External Links for SNORD50B Gene

HapMap Linkage Disequilibrium report
SNORD50B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD50B Gene

Disorders for SNORD50B Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for SNORD50B Gene including...

Search for SNORD50B Gene in MalaCards »

Relevant External Links for SNORD50B

Genetic Association Database (GAD)
SNORD50B
genes like me logo Genes that share disorders with SNORD50B: view

No data available for UniProtKB/Swiss-Prot for SNORD50B Gene

Publications for SNORD50B Gene

  1. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R. … Mori S. (Genes Cells 2000) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3
  3. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3
  4. Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data. (PMID: 17052657) Fung H.C. … Singleton A. (Lancet Neurol 2006) 48
  5. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins D.E. … van den Oord E.J. (Mol. Psychiatry 2011) 48

Products for SNORD50B Gene

Sources for SNORD50B Gene

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