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Aliases for SNORD50B Gene

Subcategory (RNA class) for SNORD50B Gene


Quality Score for this RNA gene is


Aliases for SNORD50B Gene

  • Small Nucleolar RNA, C/D Box 50B 2 3 5
  • U50B 3
  • U50 3

External Ids for SNORD50B Gene

ORGUL Members for SNORD50B Gene

Previous GeneCards Identifiers for SNORD50B Gene

  • GC06U900827
  • GC06M086449
  • GC06M086456
  • GC06M086460
  • GC06M086464
  • GC06M086388
  • GC06M086390
  • GC06M083613
  • GC06M086392
  • GC06M085678
  • GC06M085680
  • GC06M085681
  • GC06M085682
  • GC06M085683
  • GC06M085684

Summaries for SNORD50B Gene

Entrez Gene Summary for SNORD50B Gene

  • SNORD50B is a C/D box-type small nucleolar RNA (snoRNA) that is predicted to function as a guide RNA in 2-prime O-methylation of 28S ribosomal RNA (Tanaka et al., 2000 [PubMed 10792466]).[supplied by OMIM, Feb 2010]

GeneCards Summary for SNORD50B Gene

SNORD50B (Small Nucleolar RNA, C/D Box 50B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD50B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD50B Gene

Genomics for SNORD50B Gene

Regulatory Elements for SNORD50B Gene

Enhancers for SNORD50B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H085674 1.2 ENCODE 0.7 +0.0 34 6 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC SNHG5 SYNCRIP LOC100127917 KRT18P64 GC06M085679 GC06M085687 SNORD50A SNORD50B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD50B on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD50B Gene

85,677,589 bp from pter
85,677,659 bp from pter
71 bases
Minus strand

Genomic View for SNORD50B Gene

Genes around SNORD50B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD50B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD50B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD50B Gene

Proteins for SNORD50B Gene

Post-translational modifications for SNORD50B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD50B Gene

Domains & Families for SNORD50B Gene

Gene Families for SNORD50B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD50B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD50B Gene

Function for SNORD50B Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD50B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD50B Gene

Localization for SNORD50B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD50B Gene

Pathways & Interactions for SNORD50B Gene

SuperPathways for SNORD50B Gene

No Data Available

Interacting Proteins for SNORD50B Gene

Gene Ontology (GO) - Biological Process for SNORD50B Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD50B Gene

Drugs & Compounds for SNORD50B Gene

No Compound Related Data Available

Transcripts for SNORD50B Gene

mRNA/cDNA for SNORD50B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD50B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD50B Gene

No ASD Table

Relevant External Links for SNORD50B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD50B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD50B Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD50B Gene

Orthologs for SNORD50B Gene

Evolution for SNORD50B Gene

Gene Tree for SNORD50B (if available)
Gene Tree for SNORD50B (if available)

No data available for Orthologs for SNORD50B Gene

Paralogs for SNORD50B Gene

No data available for Paralogs for SNORD50B Gene

Variants for SNORD50B Gene

Sequence variations from dbSNP and Humsavar for SNORD50B Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000212406 -- 85,678,697(+) ACCTA(C/G/T)CACCC nc-transcript-variant, upstream-variant-2KB
rs1001045088 -- 85,678,907(+) CGCAG(A/G/T)CCGGC upstream-variant-2KB
rs1001491918 -- 85,678,694(+) CTCAC(A/C)TACCA nc-transcript-variant, upstream-variant-2KB
rs1001943933 -- 85,678,542(+) AGTAC(-/AT)GTGGC intron-variant, upstream-variant-2KB
rs1002543775 -- 85,679,154(+) AGCTG(-/GGCT)GGCTG nc-transcript-variant, upstream-variant-2KB

Relevant External Links for SNORD50B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD50B Gene

Disorders for SNORD50B Gene

Relevant External Links for SNORD50B

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD50B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD50B Gene

Publications for SNORD50B Gene

  1. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R … Mori S (Genes to cells : devoted to molecular & cellular mechanisms 2000) 2 3 60
  2. The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer. (PMID: 26595770) Siprashvili Z … Khavari PA (Nature genetics 2016) 3 60
  3. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3 60
  4. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 45 60
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD50B Gene

Sources for SNORD50B Gene

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