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Aliases for SNORD5 Gene

Subcategory (RNA class) for SNORD5 Gene


Quality Score for this RNA gene is


Aliases for SNORD5 Gene

  • Small Nucleolar RNA, C/D Box 5 2 3 5
  • Mgh28S-2410 SnoRNA 3
  • Mgh28S-2410 3

External Ids for SNORD5 Gene

Previous GeneCards Identifiers for SNORD5 Gene

  • GC11M093145
  • GC11M093149
  • GC11M093156
  • GC11M093162
  • GC11M093168
  • GC11M093178
  • GC11M093187
  • GC11M093198
  • GC11M093469
  • GC11M093475
  • GC11M093483
  • GC11M093499
  • GC11M093507
  • GC11M093515
  • GC11M093525
  • GC11M093541
  • GC11M093565
  • GC11M093736
  • GC11M093747
  • GC11M093759
  • GC11M093769
  • GC11M093778
  • GC11M093787

Summaries for SNORD5 Gene

GeneCards Summary for SNORD5 Gene

SNORD5 (Small Nucleolar RNA, C/D Box 5) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD5 Gene

Genomics for SNORD5 Gene

Regulatory Elements for SNORD5 Gene

Enhancers for SNORD5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H093783 1.1 ENCODE 11.3 -51.4 -51431 2 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF548 C11orf54 SNORA1 MED17 MRE11 ANKRD49 ENSG00000255233 LOC642791 ENSG00000254874 ENSG00000233536 SNORA40
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD5 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD5 Gene

93,733,228 bp from pter
93,733,300 bp from pter
73 bases
Minus strand

Genomic View for SNORD5 Gene

Genes around SNORD5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD5 Gene

Proteins for SNORD5 Gene

Post-translational modifications for SNORD5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD5 Gene

Domains & Families for SNORD5 Gene

Gene Families for SNORD5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD5 Gene

Function for SNORD5 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD5 Gene

Localization for SNORD5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD5 Gene

Pathways & Interactions for SNORD5 Gene

SuperPathways for SNORD5 Gene

No Data Available

Interacting Proteins for SNORD5 Gene

Gene Ontology (GO) - Biological Process for SNORD5 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD5 Gene

Drugs & Compounds for SNORD5 Gene

No Compound Related Data Available

Transcripts for SNORD5 Gene

mRNA/cDNA for SNORD5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD5 Gene

No ASD Table

Relevant External Links for SNORD5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD5 Gene:

genes like me logo Genes that share expression patterns with SNORD5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD5 Gene

Orthologs for SNORD5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD5 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD5 34
  • 99 (a)
(Canis familiaris)
Mammalia SNORD5 34
  • 96 (a)
(Bos Taurus)
Mammalia SNORD5 34
  • 94 (a)
(Mus musculus)
Mammalia Gm24299 34
  • 87 (a)
(Monodelphis domestica)
Mammalia SNORD5 34
  • 79 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD5 34
  • 71 (a)
(Gallus gallus)
Aves SNORD5 34
  • 74 (a)
(Anolis carolinensis)
Reptilia SNORD5 34
  • 69 (a)
Species where no ortholog for SNORD5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD5 Gene

Gene Tree for SNORD5 (if available)
Gene Tree for SNORD5 (if available)

Paralogs for SNORD5 Gene

No data available for Paralogs for SNORD5 Gene

Variants for SNORD5 Gene

Sequence variations from dbSNP and Humsavar for SNORD5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000687560 -- 93,735,293(+) AATAA(C/T)GAACA upstream-variant-2KB
rs1000823478 -- 93,735,035(+) AGGCT(G/T)GACCC downstream-variant-500B, upstream-variant-2KB
rs1001507218 -- 93,734,591(+) ATAAA(C/T)AAATA upstream-variant-2KB
rs1004421250 -- 93,732,729(+) GTAAC(G/T)TAACA downstream-variant-500B, upstream-variant-2KB
rs1004561459 -- 93,734,507(+) TCAGT(A/G)TAAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD5 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Relevant External Links for SNORD5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD5 Gene

Disorders for SNORD5 Gene

Relevant External Links for SNORD5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD5 Gene

Publications for SNORD5 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD5 Gene

Sources for SNORD5 Gene

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