Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD5 Gene

Subcategory (RNA class) for SNORD5 Gene


Quality Score for this RNA gene is


Aliases for SNORD5 Gene

  • Small Nucleolar RNA, C/D Box 5 2 3 5
  • Mgh28S-2410 SnoRNA 3
  • Mgh28S-2410 3

External Ids for SNORD5 Gene

Previous GeneCards Identifiers for SNORD5 Gene

  • GC11M093145
  • GC11M093149
  • GC11M093156
  • GC11M093162
  • GC11M093168
  • GC11M093178
  • GC11M093187
  • GC11M093198
  • GC11M093469
  • GC11M093475
  • GC11M093483
  • GC11M093499
  • GC11M093507
  • GC11M093515
  • GC11M093525
  • GC11M093541
  • GC11M093565
  • GC11M093736
  • GC11M093747
  • GC11M093759
  • GC11M093769

Summaries for SNORD5 Gene

GeneCards Summary for SNORD5 Gene

SNORD5 (Small Nucleolar RNA, C/D Box 5) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD5 Gene

Genomics for SNORD5 Gene

Regulatory Elements for SNORD5 Gene

Enhancers for SNORD5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F093783 0.5 ENCODE 11.3 -51.4 -51431 2.6 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF548 DEK C11orf54 SNORA1 MED17 MRE11 ANKRD49 ENSG00000255233 ENSG00000233536 ENSG00000254874 SNORA40 SNORA18
GH11F093654 0.6 Ensembl ENCODE 9.9 +77.9 77900 1.6 GATA3 SCRT2 MAX C11orf54 MIR1304 TAF1D SNORA1 SNORA25 SNORA32 SNORD6 MED17 SNORA18 SNORA40
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD5 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD5 Gene

93,733,228 bp from pter
93,733,300 bp from pter
73 bases
Minus strand

Genomic View for SNORD5 Gene

Genes around SNORD5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD5 Gene

Proteins for SNORD5 Gene

Post-translational modifications for SNORD5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD5 Gene

Domains & Families for SNORD5 Gene

Gene Families for SNORD5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD5 Gene

Function for SNORD5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD5 Gene

Localization for SNORD5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD5 Gene

Pathways & Interactions for SNORD5 Gene

SuperPathways for SNORD5 Gene

No Data Available

Interacting Proteins for SNORD5 Gene

Gene Ontology (GO) - Biological Process for SNORD5 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD5 Gene

Transcripts for SNORD5 Gene

mRNA/cDNA for SNORD5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD5 Gene

No ASD Table

Relevant External Links for SNORD5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD5 Gene:

genes like me logo Genes that share expression patterns with SNORD5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD5 Gene

Orthologs for SNORD5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD5 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD5 35
  • 99 (a)
(Canis familiaris)
Mammalia SNORD5 35
  • 96 (a)
(Bos Taurus)
Mammalia SNORD5 35
  • 94 (a)
(Mus musculus)
Mammalia Gm24299 35
  • 87 (a)
(Monodelphis domestica)
Mammalia SNORD5 35
  • 79 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD5 35
  • 71 (a)
(Gallus gallus)
Aves SNORD5 35
  • 74 (a)
(Anolis carolinensis)
Reptilia SNORD5 35
  • 69 (a)
Species where no ortholog for SNORD5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD5 Gene

Gene Tree for SNORD5 (if available)
Gene Tree for SNORD5 (if available)

Paralogs for SNORD5 Gene

No data available for Paralogs for SNORD5 Gene

Variants for SNORD5 Gene

Sequence variations from dbSNP and Humsavar for SNORD5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1063080 -- 93,734,928(-) AAATT(A/G)GCTGG downstream-variant-500B, upstream-variant-2KB
rs115206477 -- 93,734,089(+) CTTCA(A/G)TATTG upstream-variant-2KB
rs116789819 -- 93,734,702(+) TGAAA(C/T)TGGAA downstream-variant-500B, upstream-variant-2KB
rs116938419 -- 93,733,912(+) CAACT(C/G)CAGAA upstream-variant-2KB
rs117606882 -- 93,735,214(+) ACGTT(A/T)AACAA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD5 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Relevant External Links for SNORD5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD5 Gene

Disorders for SNORD5 Gene

Relevant External Links for SNORD5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNORD5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD5 Gene

Publications for SNORD5 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD5 Gene

Sources for SNORD5 Gene

Loading form....