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Aliases for SNORD5 Gene

Subcategory (RNA class) for SNORD5 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD5 Gene

  • Small Nucleolar RNA, C/D Box 5 2 3
  • Mgh28S-2410 SnoRNA 3
  • Mgh28S-2410 3
  • SNORD50B 6

External Ids for SNORD5 Gene

Summaries for SNORD5 Gene

GeneCards Summary for SNORD5 Gene

SNORD5 (Small Nucleolar RNA, C/D Box 5) is an RNA Gene, and belongs to the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD5 Gene

Genomics for SNORD5 Gene

Genomic Location for SNORD5 Gene

Start:
93,733,228 bp from pter
End:
93,733,300 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for SNORD5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORD5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD5 Gene

Regulatory Elements for SNORD5 Gene

Proteins for SNORD5 Gene

Post-translational modifications for SNORD5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD5 Gene

Domains for SNORD5 Gene

Gene Families for SNORD5 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD5 Gene

Function for SNORD5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORD5 Gene

Localization for SNORD5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD5 Gene

Pathways for SNORD5 Gene

SuperPathways for SNORD5 Gene

No Data Available

Interacting Proteins for SNORD5 Gene

Gene Ontology (GO) - Biological Process for SNORD5 Gene

None

No data available for Pathways by source for SNORD5 Gene

Transcripts for SNORD5 Gene

mRNA/cDNA for SNORD5 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD5 Gene

No ASD Table

Relevant External Links for SNORD5 Gene

GeneLoc Exon Structure for
SNORD5
ECgene alternative splicing isoforms for
SNORD5

Expression for SNORD5 Gene

mRNA expression in normal human tissues for SNORD5 Gene

genes like me logo Genes that share expressions with SNORD5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNORD5 Gene

Orthologs for SNORD5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD5 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD5 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD5 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24299 36
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD5 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD5 36
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD5 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD5 36
  • 69 (a)
OneToMany
Species with no ortholog for SNORD5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD5 Gene

ENSEMBL:
Gene Tree for SNORD5 (if available)
TreeFam:
Gene Tree for SNORD5 (if available)

Paralogs for SNORD5 Gene

No data available for Paralogs for SNORD5 Gene

Variants for SNORD5 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD5 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
nsv832232 CNV Gain 17160897

Relevant External Links for SNORD5 Gene

HapMap Linkage Disequilibrium report
SNORD5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNORD5 Gene

Disorders for SNORD5 Gene

No disorders were found for SNORD5 Gene.

No data available for UniProtKB/Swiss-Prot for SNORD5 Gene

Publications for SNORD5 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORD5 Gene

Sources for SNORD5 Gene

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