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Aliases for SNORD4A Gene

Subcategory (RNA class) for SNORD4A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD4A Gene

  • Small Nucleolar RNA, C/D Box 4A 2 3 5
  • RNA, U101A Small Nucleolar 2 3
  • U101A Small Nucleolar RNA 3
  • Z17A Small Nucleolar RNA 3
  • U101A SnoRNA 3
  • Z17A SnoRNA 3
  • Mgh18S-121 3
  • RNU101A 3
  • Z17A 3

External Ids for SNORD4A Gene

ORGUL Members for SNORD4A Gene

Previous HGNC Symbols for SNORD4A Gene

  • RNU101A

Previous GeneCards Identifiers for SNORD4A Gene

  • GC17P024092
  • GC17P024097
  • GC17P024101
  • GC17P024105
  • GC17P024109
  • GC17P024113
  • GC17P024117
  • GC17P024121
  • GC17P027049

Summaries for SNORD4A Gene

GeneCards Summary for SNORD4A Gene

SNORD4A (Small Nucleolar RNA, C/D Box 4A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD4A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD4A Gene

Genomics for SNORD4A Gene

Regulatory Elements for SNORD4A Gene

Enhancers for SNORD4A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H028923 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +203.5 203482 4 PKNOX1 ATF1 FEZF1 ZNF766 FOS ATF7 RUNX3 PAF1 NCOA1 JUNB PHF12 FLOT2 DHRS13 FAM222B ERAL1 SEZ6 SUPT6H NUFIP2 SNORD42A SNORD4A
GH17H028807 1.6 FANTOM5 ENCODE dbSUPER 10.7 +87.9 87858 6 HDGF FOXA2 PKNOX1 ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 SUPT6H TRAF4 LOC101927018 ENSG00000264577 ENSG00000265205 NUFIP2 ENSG00000265908 ERAL1 FAM222B PIGS
GH17H028760 1.2 Ensembl ENCODE dbSUPER 11.8 +38.7 38690 2 NFIA ZNF792 ZIC2 THRB RAD21 ETS1 POLR2A ZKSCAN8 SCRT2 CTBP2 TRAF4 TLCD1 NEK8 SNORD42A SNORD4B FAM222B ERAL1 SNORD4A RPL23A SNORD42B
GH17H028764 1.1 ENCODE dbSUPER 11.8 +41.3 41336 0 HDAC1 HDGF CTCF ATF1 TBL1XR1 ARID4B BMI1 ZNF2 RAD21 RFX5 NEK8 TLCD1 SNORD42A SNORD4B ERAL1 FAM222B RPL23A SNORD42B SNORD4A RAB34
GH17H028911 1.2 ENCODE dbSUPER 10.7 +189.7 189744 1 HDAC1 PKNOX1 ATF1 TBL1XR1 ARNT RAD21 TCF12 ZNF766 GATA2 EGR1 ERAL1 FAM222B SNORD42A SNORD4A RAB34 RPL23A SNORD42B DHRS13 LOC101927018
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORD4A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD4A Gene

Chromosome:
17
Start:
28,722,582 bp from pter
End:
28,722,653 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD4A Gene

Genes around SNORD4A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD4A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD4A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD4A Gene

Proteins for SNORD4A Gene

Post-translational modifications for SNORD4A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD4A Gene

Domains & Families for SNORD4A Gene

Gene Families for SNORD4A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD4A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD4A Gene

Function for SNORD4A Gene

Phenotypes From GWAS Catalog for SNORD4A Gene

Phenotypes for SNORD4A Gene

GenomeRNAi human phenotypes for SNORD4A:
genes like me logo Genes that share phenotypes with SNORD4A: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD4A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD4A Gene

Localization for SNORD4A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD4A Gene

Pathways & Interactions for SNORD4A Gene

SuperPathways for SNORD4A Gene

No Data Available

Interacting Proteins for SNORD4A Gene

Gene Ontology (GO) - Biological Process for SNORD4A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD4A Gene

Drugs & Compounds for SNORD4A Gene

No Compound Related Data Available

Transcripts for SNORD4A Gene

mRNA/cDNA for SNORD4A Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNORD4A
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD4A Gene

No ASD Table

Relevant External Links for SNORD4A Gene

GeneLoc Exon Structure for
SNORD4A
ECgene alternative splicing isoforms for
SNORD4A

Expression for SNORD4A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD4A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD4A Gene:

SNORD4A
genes like me logo Genes that share expression patterns with SNORD4A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD4A Gene

Orthologs for SNORD4A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD4A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoZ17 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoZ17 34
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoZ17 34
  • 84 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia snoZ17 34
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoZ17 34
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Snord4a 34
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves snoZ17 34
  • 63 (a)
OneToMany
Species where no ortholog for SNORD4A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD4A Gene

ENSEMBL:
Gene Tree for SNORD4A (if available)
TreeFam:
Gene Tree for SNORD4A (if available)

Paralogs for SNORD4A Gene

No data available for Paralogs for SNORD4A Gene

Variants for SNORD4A Gene

Sequence variations from dbSNP and Humsavar for SNORD4A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000673498 -- 28,722,930(+) AGCAG(C/G)CTGGA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1001178674 -- 28,721,774(+) TCTAC(-/TCTT)TCTTA intron-variant, upstream-variant-2KB
rs1001859064 -- 28,721,564(+) GTATT(A/T)GGCAG intron-variant, upstream-variant-2KB
rs1002678307 -- 28,720,617(+) TGCAC(A/C)TGTGG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002828875 -- 28,721,114(+) TGGGA(G/T)GCCGA intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD4A Gene

Variant ID Type Subtype PubMed ID
nsv1064087 CNV gain 25217958
nsv960457 CNV duplication 23825009

Relevant External Links for SNORD4A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD4A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD4A Gene

Disorders for SNORD4A Gene

Relevant External Links for SNORD4A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD4A

No disorders were found for SNORD4A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD4A Gene

Publications for SNORD4A Gene

  1. Cloning, sequencing, gene organization, and localization of the human ribosomal protein RPL23A gene. (PMID: 9417910) Fan W … Lennon G (Genomics 1997) 2 3 60
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 60

Products for SNORD4A Gene

Sources for SNORD4A Gene

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