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Aliases for SNORD4A Gene

Subcategory (RNA class) for SNORD4A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD4A Gene

  • Small Nucleolar RNA, C/D Box 4A 2 3 5
  • RNA, U101A Small Nucleolar 2 3
  • U101A Small Nucleolar RNA 3
  • Z17A Small Nucleolar RNA 3
  • U101A SnoRNA 3
  • Z17A SnoRNA 3
  • Mgh18S-121 3
  • RNU101A 3
  • Z17A 3

External Ids for SNORD4A Gene

ORGUL Members for SNORD4A Gene

Previous HGNC Symbols for SNORD4A Gene

  • RNU101A

Previous GeneCards Identifiers for SNORD4A Gene

  • GC17P024092
  • GC17P024097
  • GC17P024101
  • GC17P024105
  • GC17P024109
  • GC17P024113
  • GC17P024117
  • GC17P024121
  • GC17P027049

Summaries for SNORD4A Gene

GeneCards Summary for SNORD4A Gene

SNORD4A (Small Nucleolar RNA, C/D Box 4A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD4A Gene

Genomics for SNORD4A Gene

Regulatory Elements for SNORD4A Gene

Enhancers for SNORD4A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F028760 1.1 Ensembl ENCODE 11.8 +38.7 38690 2.2 ARNT CREB3L1 SIN3A YBX1 ETS1 ZNF766 KLF13 MEF2D MBD2 SMARCA4 TRAF4 TLCD1 SNORD42A SNORD4B NEK8 ERAL1 FAM222B SNORD4A RAB34 RPL23A
GH17F028763 0.5 ENCODE 11.8 +41.1 41076 0.2 CTCF MXI1 WRNIP1 ARID4B BMI1 RAD21 ZNF2 RFX5 NR2F6 SMAD5 TRAF4 SNORD4B TLCD1 NEK8 SNORD42A ERAL1 FAM222B RPL23A SNORD42B SNORD4A
GH17F028764 0.2 ENCODE 11.8 +41.3 41336 0.2 CTCF HDAC1 MXI1 WRNIP1 ARID4B BMI1 ZNF2 RAD21 RFX5 ZNF143 TLCD1 NEK8 SNORD42A SNORD4B ERAL1 FAM222B RPL23A SNORD42B SNORD4A RAB34
GH17F028773 1 FANTOM5 11.4 +51.4 51446 0.3 TRAF4 ERAL1 FAM222B FLOT2 DHRS13 SNORD42A SNORD4A SNORD4B NEK8 TLCD1
GH17F028923 0.8 FANTOM5 Ensembl ENCODE 10.9 +203.5 203482 4.8 PKNOX1 ATF1 FEZF1 CBX5 FOS PAF1 NCOA1 JUNB TSHZ1 TBX21 PHF12 FLOT2 DHRS13 ERAL1 FAM222B SEZ6 SNORD42A SNORD4A SNORD4B PROCA1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNORD4A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORD4A Gene

Chromosome:
17
Start:
28,722,582 bp from pter
End:
28,722,653 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD4A Gene

Genes around SNORD4A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD4A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD4A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD4A Gene

Proteins for SNORD4A Gene

Post-translational modifications for SNORD4A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD4A Gene

Domains & Families for SNORD4A Gene

Gene Families for SNORD4A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD4A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD4A Gene

Function for SNORD4A Gene

Phenotypes for SNORD4A Gene

GenomeRNAi human phenotypes for SNORD4A:
genes like me logo Genes that share phenotypes with SNORD4A: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD4A Gene

Localization for SNORD4A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD4A Gene

Pathways & Interactions for SNORD4A Gene

SuperPathways for SNORD4A Gene

No Data Available

Interacting Proteins for SNORD4A Gene

Gene Ontology (GO) - Biological Process for SNORD4A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD4A Gene

Transcripts for SNORD4A Gene

mRNA/cDNA for SNORD4A Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD4A Gene

No ASD Table

Relevant External Links for SNORD4A Gene

GeneLoc Exon Structure for
SNORD4A
ECgene alternative splicing isoforms for
SNORD4A

Expression for SNORD4A Gene

mRNA expression in normal human tissues for SNORD4A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD4A Gene:

SNORD4A
genes like me logo Genes that share expression patterns with SNORD4A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNORD4A Gene

Orthologs for SNORD4A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD4A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoZ17 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoZ17 35
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoZ17 35
  • 84 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia snoZ17 35
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoZ17 35
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Snord4a 35
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves snoZ17 35
  • 63 (a)
OneToMany
Species where no ortholog for SNORD4A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD4A Gene

ENSEMBL:
Gene Tree for SNORD4A (if available)
TreeFam:
Gene Tree for SNORD4A (if available)

Paralogs for SNORD4A Gene

No data available for Paralogs for SNORD4A Gene

Variants for SNORD4A Gene

Sequence variations from dbSNP and Humsavar for SNORD4A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112332513 -- 28,723,114(+) TTTTT(A/T)AAAAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs114554279 -- 28,721,368(+) AAAAA(C/T)CCTGA intron-variant, upstream-variant-2KB
rs114790825 -- 28,720,954(+) AAATT(C/T)ACTCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs11540643 -- 28,722,831(+) AACAA(A/G)CACCA downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs116545026 -- 28,721,452(+) ATAAA(A/G)TAGAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD4A Gene

Variant ID Type Subtype PubMed ID
nsv1064087 CNV gain 25217958
nsv960457 CNV duplication 23825009

Relevant External Links for SNORD4A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD4A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD4A Gene

Disorders for SNORD4A Gene

Relevant External Links for SNORD4A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD4A

No disorders were found for SNORD4A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD4A Gene

Publications for SNORD4A Gene

  1. Cloning, sequencing, gene organization, and localization of the human ribosomal protein RPL23A gene. (PMID: 9417910) Fan W. … Lennon G. (Genomics 1997) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD4A Gene

Sources for SNORD4A Gene

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