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Aliases for SNORD49B Gene

Subcategory (RNA class) for SNORD49B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD49B Gene

  • Small Nucleolar RNA, C/D Box 49B 2 3 5
  • U49B 3

External Ids for SNORD49B Gene

ORGUL Members for SNORD49B Gene

Previous GeneCards Identifiers for SNORD49B Gene

  • GC17P016292
  • GC17P016296
  • GC17P016342
  • GC17P016210

Summaries for SNORD49B Gene

GeneCards Summary for SNORD49B Gene

SNORD49B (Small Nucleolar RNA, C/D Box 49B) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD49B Gene

Genomics for SNORD49B Gene

Regulatory Elements for SNORD49B Gene


Promoters for SNORD49B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000091767 -109 1601 HDGF PKNOX1 MLX ARNT AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for SNORD49B Gene

Chromosome:
17
Start:
16,439,505 bp from pter
End:
16,439,576 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD49B Gene

Genes around SNORD49B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD49B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD49B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD49B Gene

Proteins for SNORD49B Gene

Post-translational modifications for SNORD49B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD49B Gene

Domains & Families for SNORD49B Gene

Gene Families for SNORD49B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD49B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD49B Gene

Function for SNORD49B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD49B Gene

Localization for SNORD49B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORD49B Gene

Pathways & Interactions for SNORD49B Gene

SuperPathways for SNORD49B Gene

No Data Available

Interacting Proteins for SNORD49B Gene

Gene Ontology (GO) - Biological Process for SNORD49B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD49B Gene

Drugs & Compounds for SNORD49B Gene

No Compound Related Data Available

Transcripts for SNORD49B Gene

mRNA/cDNA for SNORD49B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD49B Gene

No ASD Table

Relevant External Links for SNORD49B Gene

GeneLoc Exon Structure for
SNORD49B
ECgene alternative splicing isoforms for
SNORD49B

Expression for SNORD49B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD49B Gene:

SNORD49B
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD49B Gene

Orthologs for SNORD49B Gene

Evolution for SNORD49B Gene

ENSEMBL:
Gene Tree for SNORD49B (if available)
TreeFam:
Gene Tree for SNORD49B (if available)

No data available for Orthologs for SNORD49B Gene

Paralogs for SNORD49B Gene

No data available for Paralogs for SNORD49B Gene

Variants for SNORD49B Gene

Sequence variations from dbSNP and Humsavar for SNORD49B Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1001416138 -- 16,439,012(+) CTTAA(G/T)GGCCT nc-transcript-variant, upstream-variant-2KB
rs1002613980 -- 16,438,309(+) TTTTT(C/T)AAGGA upstream-variant-2KB
rs1003345672 -- 16,439,124(+) GAGCT(C/T)CTGTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1005512248 -- 16,437,874(+) CCGGG(C/G)GCCTG upstream-variant-2KB
rs1008230488 -- 16,438,794(+) GTGGG(A/G)CCCAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORD49B Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
nsv1063764 CNV loss 25217958

Relevant External Links for SNORD49B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD49B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD49B Gene

Disorders for SNORD49B Gene

Relevant External Links for SNORD49B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORD49B

No disorders were found for SNORD49B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD49B Gene

Publications for SNORD49B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 2 3 64
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORD49B Gene

Sources for SNORD49B Gene

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